MmuINT1009813 @ mm10
Intron Retention
Gene
ENSMUSG00000011832 | Evi5l
Description
ecotropic viral integration site 5 like [Source:MGI Symbol;Acc:MGI:2442167]
Coordinates
chr8:4201934-4203076:+
Coord C1 exon
chr8:4201934-4201966
Coord A exon
chr8:4201967-4202935
Coord C2 exon
chr8:4202936-4203076
Length
969 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
CCCATCCTCACTGTGCTCAGGGG
3' ss Score
6.91
Exon sequences
Seq C1 exon
GAGAGCGCGGCCTTGGCTGATAGGTTAATCCAG
Seq A exon
GTACTGTAGCTTTTCCATATACCTCTGCACTCTCCAACCCAGGCCCTTCCCGCGTCCCTGCACAAGACAGCCAGTAACCACCTTTTTCCTGGCCACTGCCATTCTGGGGGCAAGAGCAACTTGCATGGAGGGGCAGCTTCCAGGAAGAACAATGCCTTGAGGGTGGGGGCATGTGAGCTGGAGACAAACACAGGATGGGAGGCCTTTGTGGGAGTGAGTTTAGAAGAAGGCTTACCCTCAGGATAGACAGCAGGTTTCCTCCACCGAGGAGCAAGGGACGCTACCCCAGTAGGACTCAGGACTTAGAGCATTCCATTTCAGGTCCTGACACATTTGTTGGCTAAGCTTACACTAATGTGCTCACACACAGGCATGTATGCATGCAGACACACACACAACTGTTCTGACTCCTCTCTGCTTCTGCTGTCACCCATCGCCATCTCTCACTTGCCTGCTTGTGCTGCTGCTTCACTCTTGGATGGCTTTTCTAGAAGCTTCTGCACAGTGCCCAGCGGCTCCGAGCCTGGAATGGGGAGCAGGGACTATCAAGCTGGGTGGGAAGGAGGATGCAGGAGGAGGGAATGCCCCGGGGAGAGTCGTAGAGGTGTATCACCTCACACAAGCCTTTTGCTTTGTACAACAATCTTTTTCTTCACTTGGGACAGAGGTAAACAATCCGGATTGGGGATGGAGCCCCAGCATGGGAGTTGGGGGCATTTGTCACTGAAGCCTGGTAGCACATCCAGACTGTCCATTACTCCCTGGATCCTTTAGGTGGCCTGTTCTTGCCTGTCTCCACCCATTCTGAGGCCTGCTTGGGCACCCCATCCCAGGCTCTGAGCACTAAAGGCCATGCCTGTCTCACTTTAACCCTCCCTCTCTCATCCTCTCTGAGCTTCCTAGAGGCCAGGCCTGGGACCAAAGCAGATGGTCATGGTATCCTTTCCACCCCATCCTCACTGTGCTCAG
Seq C2 exon
GGGCAGGTGACACGGGCACAGGAGGCTGAGGAGAACTATGTCATCAAACGGGAGTTGGCAGTAGTGAGACAACAGTGTAGCTCGACTGCAGAGGACCTTCAGAAAGCACAGAGTACCATTCGGCAGTTGCAAGAACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011832:ENSMUST00000176149:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.351
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types