MmuEX0017502 @ mm10
Exon Skipping
Gene
ENSMUSG00000011832 | Evi5l
Description
ecotropic viral integration site 5 like [Source:MGI Symbol;Acc:MGI:2442167]
Coordinates
chr8:4200868-4203076:+
Coord C1 exon
chr8:4200868-4200921
Coord A exon
chr8:4201934-4201966
Coord C2 exon
chr8:4202936-4203076
Length
33 bp
Sequences
Splice sites
3' ss Seq
GAACCCCCTTCGCCTGGTAGGAG
3' ss Score
6.13
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
AGGCTTCGAACAGAGAACCGGCTGCTCAAACAGCGGATTGAGACCCTAGAGAAG
Seq A exon
GAGAGCGCGGCCTTGGCTGATAGGTTAATCCAG
Seq C2 exon
GGGCAGGTGACACGGGCACAGGAGGCTGAGGAGAACTATGTCATCAAACGGGAGTTGGCAGTAGTGAGACAACAGTGTAGCTCGACTGCAGAGGACCTTCAGAAAGCACAGAGTACCATTCGGCAGTTGCAAGAACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011832_MULTIEX3-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.042 A=0.000 C2=0.351
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGAACAGAGAACCGGCTG
R:
CTGCCAACTCCCGTTTGATGA
Band lengths:
112-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types