GgaEX0028928 @ galGal4
Exon Skipping
Gene
ENSGALG00000005935 | EVI5
Description
ecotropic viral integration site 5 [Source:HGNC Symbol;Acc:HGNC:3501]
Coordinates
chr8:13023595-13033610:+
Coord C1 exon
chr8:13023595-13023648
Coord A exon
chr8:13026045-13026077
Coord C2 exon
chr8:13033476-13033610
Length
33 bp
Sequences
Splice sites
3' ss Seq
TCTGAATTTTTCCTTTGTAGGAA
3' ss Score
10.19
5' ss Seq
CAGGTATAG
5' ss Score
8.73
Exon sequences
Seq C1 exon
AGGTTGCGAACTGAAAATAGGCTCCTAAAACAGCGCATTGAAACATTAGAAAAA
Seq A exon
GAAAGTGCTTCCTTGGCAGATAGATTGATACAG
Seq C2 exon
CATAAATGCAGTTCACGATACAGTGAAGACTTTGTGCTACAGCTGGAAAAAGAGCTGGTCCAAGCCAGGCTGAGTGAAGCAGAATCCCACTGTGCCCTGAAGGAGATGCAAGATAAAGTTCTAGAGATGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005935_MULTIEX1-10/18=9-13
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.200
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCTCCTAAAACAGCGCATT
R:
GGGATTCTGCTTCACTCAGCC
Band lengths:
124-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]