GgaINT0039471 @ galGal4
Intron Retention
Gene
ENSGALG00000005935 | EVI5
Description
ecotropic viral integration site 5 [Source:HGNC Symbol;Acc:HGNC:3501]
Coordinates
chr8:13023595-13026077:+
Coord C1 exon
chr8:13023595-13023648
Coord A exon
chr8:13023649-13026044
Coord C2 exon
chr8:13026045-13026077
Length
2396 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
TCTGAATTTTTCCTTTGTAGGAA
3' ss Score
10.19
Exon sequences
Seq C1 exon
AGGTTGCGAACTGAAAATAGGCTCCTAAAACAGCGCATTGAAACATTAGAAAAA
Seq A exon
GTAAGTATGCTAATGACCAGATTTAATCTATTATTTACATTCATTATATCAATTAGTCATCTTATTATATGAAATGAGTCTAACTTACTGTTTTTTCCGGTTTATTTACAACGTTCACTAACAGTGCTTAGCCAAAAGCGTGGCAATAACAAAGCTGTTAAGGTCAGTGCTTATAAACGTTTGTCTGGTTCTTACTTGAAATTGAACACCTTAGTATATCTGATTTCTGTAGCATTTTATTCCTGAACTGGAGGTATCAAAATACAGACGACTACATAAAATAGTGTAATGCCTAGGTGGAAAAGAGGTTATTGTGAGAGAATCCTTGCTTCTGGCAATCTGAGGTTGCTAGGTGTTTTTATGTAGGAGTAAGATGACAGGCATATTGATGATCAGAGAGGTGAAGGTGAAAGATTGTTGTCACTGAGTACAGCAGTAGAAGGATGTTGCAGTATTCACGTTCAGTACAGAAGTCTGCTGCTGTCAACTATTAATTCATCTTACATGATTTGGAATTTTTGTAGAAATTACAGATGCAGAGGGCCAGGGGAAATAATTTCTCACAGATATAGTCTAAAATAGGGTCTTGTTAGGCTTCTTTGTAGCTGGATACAATTTCCAAGTATGTGTGATAACTGTTGTCTATATACTGATAGCATGTAGGCATTGTTCTTTGGCTTTCCCGCGTTCTGATATCATGCTTCATGTGACAGACTGAATCTAAGAAGGTGTGCTCTAGCATGAGAACGTTCTTACCCATTTTAACTGCAAATAACAGCTGTCTTTCAGCAGATGAAGTTGAATGCTCATGACTTACAAAGAGTTGCTTCACAGTGAGGAAAAGGACAGACTAAATTTTTCTGAAATAATTGAACAATGTTGGATTTCAGATATTTCTTCAAGAAGCCATAATACATATAACAGCGTATGTCAAATTGTGATTAATTGTGATTACTGAACTGCGGTTTGGGAAGAAATGCACATTGTGAGGACATCTTGTGAAATGAAGTTGGGACCAAAAATATAATTTTATGAACCTAGTTGTTTCAGATCTTGAATCGTGGGTGAAGTTAACGGGAGAGAACAGACTCTGAGATGTTTAATTTGGTAGCAAATCATGTTAGTGTTTTTGTGTGGACTTATGGTAGTAAATGTGCCTGGTTTATGCTTGATTTGCAGAGGTCTGAAGTTTGATTTTTTTTTCTTTATTTTTTTTTGCTAGGAGCTCAGTGATGAGCCACCAGACAACTAACTGCCTGTAAATCGTGCTTAAAATTTCAGAATTCATTTTCAGAATATCCCAGTCTGATTGGAATTGAAATGCTTCAAAATGAAAAAATACCTCTATTAATTATCCTCATCAGAAATTCTTGTCATCAAAGCATCTAAGAACAGATCATAAAGTTAAAAACAAAAAAAAAACAAACGAAAGATATCCTCAATTCTTCTCTTGGGAACTTTTTCTTTTAAAATTTCTTTCCTCTTCCTCACAAATGATTTACTTGTGATTTTCTTGTCATACTGTAATGACAGACACTGTAAGATGTAACCTTGCTACATTTAACTGGTAGCTCCTATCAACCAGTTCAAATTCATCCTTGGAATTTTTATAAGATTCTGGATGGTTGAACTGTCTCTGAATAGAATGCCATAGAGTCTGTGCAGATTGGGTGCTTACGAAGGTGATAGACAGGAGATGTCTTTAATGAAATTGTACGTCTTAGCAGGGTGGAGGAAATGCAGTGCTCGTCAGCGTGCATACATTTCTTGTGGTACTTTGGTAAGGGAAGAGAATCTATGAACTGTTTGAGTTATTGCTAAAGCTCATTAGAACAAAATATTAGCTGTCATAGTTGAAATTTTTCTTCTTAGGTCTTTCAGTTTGCACCATTTAATTTCCCTGCTTCATCTCTGTGGAAGCGTTAGTTCTGCATGGATGTCTCTGCACTTAGTGGAGTTGCTTTTGTGCTCAAATTATGCCTTCCTTTCGTAGTGTGTGTGGACCGGAGACCAAGTCTGCATTCATCTATTAGATCATATCAGACGTTGTGCCAGTAACTCTTCCTAATTAAAAAAAAAAAAAAAAAGCCATTCAGATAAAAATAACCAATCTCCTGTAAGTGAATTCTAAGTATAACAGAAGTCTGGCTTTGGTACCTGCTTGTGTCAAGGATTGGCTCACTACATCTTTGCAGTAAAAGGCTCCTTACTGCAATTTCCAGTCTGAGTTGCCTTAACTTACATAAGAGCTCTTAACTTTGTAAAAACAAGTTGCCTGTATAGAAAAATGGGTAGAATTTGGGCATTTTCTTTCTCTGCTCTGGTCTTTTTTTGTCACTATTATCACACTTTTGTTTTTTCTTTTCCTTATTCCTATCTGAATTTTTCCTTTGTAG
Seq C2 exon
GAAAGTGCTTCCTTGGCAGATAGATTGATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005935:ENSGALT00000009552:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]