DreINT0065060 @ danRer10
Intron Retention
Gene
ENSDARG00000070839 | evi5b
Description
ecotropic viral integration site 5b [Source:ZFIN;Acc:ZDB-GENE-041111-244]
Coordinates
chr6:29049409-29051740:-
Coord C1 exon
chr6:29051687-29051740
Coord A exon
chr6:29049541-29051686
Coord C2 exon
chr6:29049409-29049540
Length
2146 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
TTTTTTTTGGTTCATTTTAGAAG
3' ss Score
9.21
Exon sequences
Seq C1 exon
AGACTACGCACAGAAAACAGACTTCTGAAGCAGCGAATAGACACTCTGGAGAAA
Seq A exon
GTGAGTGACATAACAGACGATTCGAAACATTTATCGGTCAAACACACCATTTCATCATTCCATGTTTCCTAATCACAAATTGGTCCGTTGCTCATCTCCTCGCTGTCAGTTTTCACAACTCTTTGGTGTCACCAATTACAAATGCTCACACACGCATGAACCTCCTCAAGCTGTTGTGTTTTATCAGGCTGGTAAGTACCAGTACACCGGTAACAAAAGAAAAGTCACCCTGTTGTTTTGGGTGTACATATGGGTAATAAATGCTTGTCAGCTACATATGCTAATTTCAGGCCAACGTGGTTGTGGTTTAAGCATGAGCGAAAAGCTGAACCTGCAGTATTGCATGTTCTCTGCTTGTGAAGGCATGCTTGTGTCATGCATGAAAAAGAAAGCCCACGGTGCAAGTCGGTCTATAAAAAAACACCTCCACCTTCATCACTTCTCAGCATGGAACCTTTGTACTCGAACGAAGCACTAACTCAAACGCCTTCAGACGTTCCCCGTTCATAACCCAAGGCTGTATTTGTCACCCAAATATAGTAAACCTATAGGCATTAAAATAACACTCTTTCCGTTTTATTCTTACCCTACTCACACTCTCACACTGTCCTCTGCTTGGCCTCCTTTTACGCCTTTTTTATCTTGTTGTGGTGCCACAATCTTGCTTTATTTCCATAACCACAGCAGAAACACCACGCTCAAACAATGTTCCTTTTCTACCCCACCTCACTGTGACCGTTTCAATGCTGCATTTGTGCTGATTTAGTAATGTTCATCTAGACAAGTGCAATGTTTTAATGTAGGGGTATGAAAGAGAGCACTATTTTCTGTCAAATCAATCTTATTGTTTTGTTCTGTGTTGTAATATCCTTTGGTCTCTCTCTTCTTTTTTGCCTTTTCCTTTATGGTTTTCTCTGTTTTTAGGAAAGTGCTTCTTTGGCAGATAGATTGATCCAGGTACAATTTGCCCTCTCCCCTCCATCTTTTTGCTCTGTCTTTCCCCTTTAAGCTGTCTTTAGCTTTGCGTAATTTCTTTGATTTACCCAATAAACATCTCACATTTACTCACAATCAAAAGTGAAAAAAAGGCAAATTCTGCAGTTTCTGACTTCAGGGAAGAGGCCTTACTGTGCTTATTATGTTTGGGCTGTTGTCCTGATTATTGGTGCAATATTACAATAATCCCCCCTTAATAGTGGAAGAAAATTGTAAGTGCTAAATTGAAAGCCTAAAACTTCTAACAGCATGACCTATAGAGCTTGAGATCCAGCATTATTTTTCTCCATCCATACGTCCGTTTCTACCCATTCCGATACTCCGCTCACCCCTCATCCATAATTGGTCATGTCAGGGTCAGGTGACGCGAGCCCAAGAAGCGGAGGAAAACTACCTGGTCAAGCGGGAGCTGGCCACGGTCAAACAGCACATTGAGGAGACCAGCGTACAGCTGGAGCAAGCGCAAAGCACCATCAGACAACTCCAGCAGCCATTTGCGGTAAGGACTGTTTAGAGACGGCGCCTTCTGGATGAGAAGTCGTTCTTCGAACAGAGAAACCTTATGAGAAATAATTTGCTCCCTCATGTCAGCAGTTTGCAGTTGGAATTGTACTTGAAACTTTCAATGTTGCCTAGCAACAAAATCTCAGCAACCAGTGAGCTTCATATGGCAACTCTTGTAATGATGCTCTTTACATGCATGACTGCAGATCAGAGCAGCAGAGCAGAGGTCATTTGCGTGCACAAGTATGCCAAATGGGGCTTATGTATATGTCAAGTGTAACTTAACCAGAGAGGCTTGAGTCTGTTTAATATCATCTACACTGAGCAGACGGGCAGAATATTGCTCATCAATTATTAATGTGTAAATGTTTAACACTGCAGAAAAAGAAACAGATTATGTGTCATGTGCTGGCAGGAAAGTGCTGTTTTACATAATGCTGTGTTGCAGTCTCATTATGTTTTCATGTGGCTGTTAGTAAAACCATATGCGTGAGTGGAGGGAACTGTTTGGTTCATTTTAAACCTCAGGATTGGTTAAAATGATTGTGGTAATCTGTTGTAAATCGTTTACTCACTGATTAAGTTTTTTTGATAGAATTTTTGGTCACACAATTTCTTGTTTTTTTTTTTTTTTGGTTCATTTTAG
Seq C2 exon
AAGGGGAATCCACGCTACACAGAGGAGTCCATCCTTCAGTTGGAGAGAGAACTGGTGCAGGCCCGTCTAAAGGAGGCTGAGTCTCAGTGTGCACTAAAAGAGATGCAGGACAAGATACTCTATATGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070839:ENSDART00000124947:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=NA C2=0.114
Domain overlap (PFAM):
C1:
PF138511=GAS=FE(15.2=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]