GgaEX0008389 @ galGal4
Exon Skipping
Gene
ENSGALG00000005935 | EVI5
Description
ecotropic viral integration site 5 [Source:HGNC Symbol;Acc:HGNC:3501]
Coordinates
chr8:13026623-13035992:+
Coord C1 exon
chr8:13026623-13026769
Coord A exon
chr8:13033476-13033610
Coord C2 exon
chr8:13035852-13035992
Length
135 bp
Sequences
Splice sites
3' ss Seq
TATTTCTGCAAACTTTGTAGCAT
3' ss Score
5.1
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
GGACAAGTGACAAGGGCCCAGGAGGCTGAGGAAAACTACCTCATAAAACGGGAGCTGGCCACCATCAAACAGCAGAGTGATGAGGCCAATACTAAACTGGAGCAAGCTGAGAGTACCATCAGGGAGCTCCAACAGCAGCAGCAATGG
Seq A exon
CATAAATGCAGTTCACGATACAGTGAAGACTTTGTGCTACAGCTGGAAAAAGAGCTGGTCCAAGCCAGGCTGAGTGAAGCAGAATCCCACTGTGCCCTGAAGGAGATGCAAGATAAAGTTCTAGAGATGGAAAAG
Seq C2 exon
AGGAATAGCTCTCTCCCTGATGAGGAAAATGTTGCTAGACTACAAGAAGAACTGATTGCAGTAAAACTAAGAGAAGCAGAAGCTTTGATGGGTCTCAAAGAACTAAGGCAGCAAGTCAAAGACTTGGAAGAACACTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005935_MULTIEX1-13/18=11-14
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.265 A=0.200 C2=0.245
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000009552fB906
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATAAAACGGGAGCTGGCC
R:
TGCCAGTGTTCTTCCAAGTCT
Band lengths:
248-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]