RnoEX0033406 @ rn6
Exon Skipping
Gene
ENSRNOG00000002039 | Evi5
Description
ecotropic viral integration site 5 [Source:RGD Symbol;Acc:2322879]
Coordinates
chr14:2960528-2979089:+
Coord C1 exon
chr14:2960528-2960581
Coord A exon
chr14:2977679-2977813
Coord C2 exon
chr14:2978949-2979089
Length
135 bp
Sequences
Splice sites
3' ss Seq
TATATGTTCATAATCTTTAGCAT
3' ss Score
5.65
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
AGGTTACGCACAGAAAACAGGCTTTTAAAACAGCGCATTGAAACACTAGAAAAA
Seq A exon
CATAAATGCAGTTCCACCTACAACGAAGATTTTGTGCTGCAGTTGGAGAAGGAGTTGGTCCAAGCCAGACTGAGTGAAGCTGAGTCTCAGTGTGCCCTGAAGGAGATGCAGGACAAAGTGCTGGACATAGAGAAG
Seq C2 exon
AAGAACAACTCATTTCCTGATGAGAATAACATTGCAAGGCTTCAGGAAGAACTCATTGCTGTGAAGCTGAGGGAAGCTGAAGCCATTATGGGTTTGAAAGAACTTCGACAGCAAGTCAGAGACTTAGAAGAGCACTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002039-'40-40,'40-37,45-40
Average complexity
C2
Mappability confidence:
92%=88=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.072 C2=0.191
Domain overlap (PFAM):
C1:
NO
A:
PF065706=DUF1129=PU(90.9=88.9)
C2:
PF065706=DUF1129=PD(4.5=4.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTACGCACAGAAAACAGGC
R:
CTGCCAGTGCTCTTCTAAGTCT
Band lengths:
194-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]