DreEX6022147 @ danRer10
Exon Skipping
Gene
ENSDARG00000070839 | evi5b
Description
ecotropic viral integration site 5b [Source:ZFIN;Acc:ZDB-GENE-041111-244]
Coordinates
chr6:29047105-29051740:-
Coord C1 exon
chr6:29051687-29051740
Coord A exon
chr6:29049409-29049540
Coord C2 exon
chr6:29047105-29047245
Length
132 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTGGTTCATTTTAGAAG
3' ss Score
9.21
5' ss Seq
CAGGTGGTG
5' ss Score
1.16
Exon sequences
Seq C1 exon
AGACTACGCACAGAAAACAGACTTCTGAAGCAGCGAATAGACACTCTGGAGAAA
Seq A exon
AAGGGGAATCCACGCTACACAGAGGAGTCCATCCTTCAGTTGGAGAGAGAACTGGTGCAGGCCCGTCTAAAGGAGGCTGAGTCTCAGTGTGCACTAAAAGAGATGCAGGACAAGATACTCTATATGGAACAG
Seq C2 exon
AGAAATACATCCCTACCAGATGAGAATAATGTGGTACGTCTTCAGGAGGAGCTAATTGGTGTGAAACTGAGGGAGGCAGAGGCTTTAACAGGCCTTAAAGAGCTTCGACAGCAGGTCAGAGATCTGGAGGAGCACTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070839-'25-23,'25-22,28-23=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.114 C2=0.170
Domain overlap (PFAM):
C1:
PF138511=GAS=FE(15.2=100)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTACGCACAGAAAACAGACT
R:
CTGCCAGTGCTCCTCCAGATC
Band lengths:
195-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]