GgaEX0008389 @ galGal3
Exon Skipping
Gene
ENSGALG00000005935 | EVI5
Description
NA
Coordinates
chr8:14778404-14787773:+
Coord C1 exon
chr8:14778404-14778550
Coord A exon
chr8:14785257-14785391
Coord C2 exon
chr8:14787633-14787773
Length
135 bp
Sequences
Splice sites
3' ss Seq
TATTTCTGCAAACTTTGTAGCAT
3' ss Score
5.1
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
GGACAAGTGACAAGGGCCCAGGAGGCTGAGGAAAACTACCTCATAAAACGGGAGCTGGCCACCATCAAACAGCAGAGTGATGAGGCCAATACTAAACTGGAGCAAGCTGAGAGTACCATCAGGGAGCTCCAACAGCAGCAGCAATGG
Seq A exon
CATAAATGCAGTTCACGATACAGTGAAGACTTTGTGCTACAGCTGGAAAAAGAGCTGGTCCAAGCCAGGCTGAGTGAAGCAGAATCCCACTGTGCCCTGAAGGAGATGCAAGATAAAGTTCTAGAGATGGAAAAG
Seq C2 exon
AGGAATAGCTCTCTCCCTGATGAGGAAAATGTTGCTAGACTACAAGAAGAACTGATTGCAGTAAAACTAAGAGAAGCAGAAGCTTTGATGGGTCTCAAAGAACTAAGGCAGCAAGTCAAAGACTTGGAAGAACACTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005935_MULTIEX1-3/3=2-C2
Average complexity
C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.301 A=0.217 C2=0.266
Domain overlap (PFAM):
C1:
NO
A:
PF065706=DUF1129=PU(93.0=88.9)
C2:
PF065706=DUF1129=PD(2.3=2.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATAAAACGGGAGCTGGCC
R:
TGCCAGTGTTCTTCCAAGTCT
Band lengths:
248-383
Functional annotations
There are 0 annotated functions for this event