GgaEX0008387 @ galGal3
Exon Skipping
Gene
ENSGALG00000005935 | EVI5
Description
NA
Coordinates
chr8:14775376-14785391:+
Coord C1 exon
chr8:14775376-14775429
Coord A exon
chr8:14778404-14778550
Coord C2 exon
chr8:14785257-14785391
Length
147 bp
Sequences
Splice sites
3' ss Seq
CCACATAATTATGTCCTAAGGGA
3' ss Score
4.21
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
AGGTTGCGAACTGAAAATAGGCTCCTAAAACAGCGCATTGAAACATTAGAAAAA
Seq A exon
GGACAAGTGACAAGGGCCCAGGAGGCTGAGGAAAACTACCTCATAAAACGGGAGCTGGCCACCATCAAACAGCAGAGTGATGAGGCCAATACTAAACTGGAGCAAGCTGAGAGTACCATCAGGGAGCTCCAACAGCAGCAGCAATGG
Seq C2 exon
CATAAATGCAGTTCACGATACAGTGAAGACTTTGTGCTACAGCTGGAAAAAGAGCTGGTCCAAGCCAGGCTGAGTGAAGCAGAATCCCACTGTGCCCTGAAGGAGATGCAAGATAAAGTTCTAGAGATGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005935_MULTIEX1-2/3=C1-3
Average complexity
C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.301 C2=0.217
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF065706=DUF1129=PU(93.0=88.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTTGCGAACTGAAAATAGGCT
R:
TTCCATCTCTAGAACTTTATCTTGCA
Band lengths:
186-333
Functional annotations
There are 0 annotated functions for this event