HsaEX0023364 @ hg19
Exon Skipping
Gene
ENSG00000067208 | EVI5
Description
ecotropic viral integration site 5 [Source:HGNC Symbol;Acc:3501]
Coordinates
chr1:93101759-93129009:-
Coord C1 exon
chr1:93128977-93129009
Coord A exon
chr1:93128276-93128422
Coord C2 exon
chr1:93101759-93101893
Length
147 bp
Sequences
Splice sites
3' ss Seq
CACAAAAATTATGTCCTAAGGGA
3' ss Score
4.25
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GAAAGTGCTTCCTTGGCAGATAGATTGATACAG
Seq A exon
GGACAAGTGACAAGAGCCCAGGAGGCTGAGGAAAACTACCTCATAAAACGGGAGTTGGCCACCATCAAACAGCAGAGTGATGAGGCCAGTGCTAAGCTGGAGCAAGCTGAAAATACCATCAGGAAGCTCCAGCACCAACAACAATGG
Seq C2 exon
CATAAATGCAGTTCCAACTACAACGAAGATTTTGTGCTACAGCTAGAGAAGGAATTGGTCCAAGCCCGACTGAGTGAAGCTGAGTCTCAGTGTGCATTAAAAGAGATGCAGGATAAAGTCTTGGATATAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000067208_MULTIEX1-12/18=11-13
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.045 A=0.357 C2=0.089
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF065706=DUF1129=PU(95.3=91.1)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGTGCTTCCTTGGCAGAT
R:
TCTATATCCAAGACTTTATCCTGCA
Band lengths:
164-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)