RnoEX0033421 @ rn6
Exon Skipping
Gene
ENSRNOG00000002039 | Evi5
Description
ecotropic viral integration site 5 [Source:RGD Symbol;Acc:2322879]
Coordinates
chr14:2962586-2977813:+
Coord C1 exon
chr14:2962586-2962618
Coord A exon
chr14:2963176-2963322
Coord C2 exon
chr14:2977679-2977813
Length
147 bp
Sequences
Splice sites
3' ss Seq
CAAAACAATTATGTCCTAAGGGA
3' ss Score
3.66
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GAAAGTGCTTCCTTGGCAGATAGATTGATACAG
Seq A exon
GGACAAGTGACCAGAGCCCAGGAGGCTGAGGAAAACTACCTCATAAAACGGGAGTTGGCCACCATCAAACAACAGACTGATGCAGCCAGGGCTAAGCTGGAGCAGGCTGAAAGCACCATCAGGGAGCTCCAGCACCATCGCCATTGG
Seq C2 exon
CATAAATGCAGTTCCACCTACAACGAAGATTTTGTGCTGCAGTTGGAGAAGGAGTTGGTCCAAGCCAGACTGAGTGAAGCTGAGTCTCAGTGTGCCCTGAAGGAGATGCAGGACAAAGTGCTGGACATAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002039_MULTIEX3-6/6=5-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.429 C2=0.072
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF065706=DUF1129=PU(90.9=88.9)
Main Inclusion Isoform:
ENSRNOT00000061630fB5047
Main Skipping Isoform:
ENSRNOT00000061630fB5043
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGTGCTTCCTTGGCAGAT
R:
TATGTCCAGCACTTTGTCCTGC
Band lengths:
162-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]