DreEX0030981 @ danRer10
Exon Skipping
Gene
ENSDARG00000070839 | evi5b
Description
ecotropic viral integration site 5b [Source:ZFIN;Acc:ZDB-GENE-041111-244]
Coordinates
chr6:29049409-29050762:-
Coord C1 exon
chr6:29050730-29050762
Coord A exon
chr6:29050192-29050335
Coord C2 exon
chr6:29049409-29049540
Length
144 bp
Sequences
Splice sites
3' ss Seq
TCCATAATTGGTCATGTCAGGGT
3' ss Score
2.97
5' ss Seq
GCGGTAAGG
5' ss Score
9.63
Exon sequences
Seq C1 exon
GAAAGTGCTTCTTTGGCAGATAGATTGATCCAG
Seq A exon
GGTCAGGTGACGCGAGCCCAAGAAGCGGAGGAAAACTACCTGGTCAAGCGGGAGCTGGCCACGGTCAAACAGCACATTGAGGAGACCAGCGTACAGCTGGAGCAAGCGCAAAGCACCATCAGACAACTCCAGCAGCCATTTGCG
Seq C2 exon
AAGGGGAATCCACGCTACACAGAGGAGTCCATCCTTCAGTTGGAGAGAGAACTGGTGCAGGCCCGTCTAAAGGAGGCTGAGTCTCAGTGTGCACTAAAAGAGATGCAGGACAAGATACTCTATATGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070839_MULTIEX2-3/3=2-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.146 C2=0.114
Domain overlap (PFAM):
C1:
PF138511=GAS=FE(8.9=100)
A:
PF138511=GAS=PD(38.4=89.6)
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGTGCTTCTTTGGCAGAT
R:
TTCCATATAGAGTATCTTGTCCTGCA
Band lengths:
162-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]