BtaEX0013423 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011363 | EVI5
Description
ecotropic viral integration site 5 [Source:HGNC Symbol;Acc:HGNC:3501]
Coordinates
chr3:50962144-50984696:+
Coord C1 exon
chr3:50962144-50962176
Coord A exon
chr3:50962729-50962875
Coord C2 exon
chr3:50984562-50984696
Length
147 bp
Sequences
Splice sites
3' ss Seq
CACAAAAATTATGTCCTAAGGGA
3' ss Score
4.25
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GAAAGTGCTTCCTTGGCAGATAGATTGATACAG
Seq A exon
GGACAAGTGACAAGAGCCCAGGAGGCTGAGGAAAACTACCTCATAAAACGGGAGCTGGCCACCATCAAACAGCAGAGTGATGAGGCCAGTGCTAAACTGGAGCAAGCTGAAAATACCATCAGGAAGCTCCAGCACCAACAACAATGG
Seq C2 exon
CATAAATGCAGTTCCAACTACAATGAAGATTTTGTGCTACAGCTGGAGAAGGAATTGGTCCAAGCCCGACTGAGTGAAGCTGAGTCTCAGTGTGCACTGAAGGAAATGCAGGATAAAGTTCTGGATATAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011363_MULTIEX2-3/3=2-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.306 C2=0.052
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF065706=DUF1129=PU(93.2=91.1)
Main Inclusion Isoform:
ENSBTAT00000040289fB2558
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGTGCTTCCTTGGCAGAT
R:
TCTATATCCAGAACTTTATCCTGCA
Band lengths:
164-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development