BtaEX0013422 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011363 | EVI5
Description
ecotropic viral integration site 5 [Source:HGNC Symbol;Acc:HGNC:3501]
Coordinates
chr3:50960245-50984696:+
Coord C1 exon
chr3:50960245-50960298
Coord A exon
chr3:50962144-50962176
Coord C2 exon
chr3:50984562-50984696
Length
33 bp
Sequences
Splice sites
3' ss Seq
CTGAATTTTTCCTTTTGTAGGAA
3' ss Score
10.16
5' ss Seq
CAGGTATAG
5' ss Score
8.73
Exon sequences
Seq C1 exon
AGGTTACGAACAGAAAATAGACTTTTAAAACAGCGCATTGAAACATTAGAAAAA
Seq A exon
GAAAGTGCTTCCTTGGCAGATAGATTGATACAG
Seq C2 exon
CATAAATGCAGTTCCAACTACAATGAAGATTTTGTGCTACAGCTGGAGAAGGAATTGGTCCAAGCCCGACTGAGTGAAGCTGAGTCTCAGTGTGCACTGAAGGAAATGCAGGATAAAGTTCTGGATATAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011363_MULTIEX2-2/3=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.052
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF065706=DUF1129=PU(93.2=91.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGCGCATTGAAACATTAGA
R:
GACTCAGCTTCACTCAGTCGG
Band lengths:
112-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development