MmuEX0017495 @ mm10
Exon Skipping
Gene
ENSMUSG00000011831 | Evi5
Description
ecotropic viral integration site 5 [Source:MGI Symbol;Acc:MGI:104736]
Coordinates
chr5:107799126-107812411:-
Coord C1 exon
chr5:107812358-107812411
Coord A exon
chr5:107810290-107810322
Coord C2 exon
chr5:107799126-107799260
Length
33 bp
Sequences
Splice sites
3' ss Seq
CTAAATTTTTCCTTTTGTAGGAA
3' ss Score
9.5
5' ss Seq
CAGGTATAG
5' ss Score
8.73
Exon sequences
Seq C1 exon
AGGCTACGCACAGAAAATAGGCTTTTAAAACAGCGCATTGAAACATTAGAAAAA
Seq A exon
GAAAGTGCTTCCTTGGCAGATAGATTGATACAG
Seq C2 exon
CATAAATGCAGTTCCACCTACAACGAAGATTTCGTGCTGCAGCTGGAGAAGGAATTGGTTCAAGCCAGACTGAGTGAAGCCGAGTCTCAGTGTGCACTGAAGGAGATGCAGGATAAAGTGTTGGATATAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011831_MULTIEX3-5/6=3-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.093 A=0.000 C2=0.078
Domain overlap (PFAM):
C1:
PF138511=GAS=FE(15.6=100)
A:
PF138511=GAS=FE(9.2=100)
C2:
PF065706=DUF1129=PU(90.9=88.9)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTACGCACAGAAAATAGGCT
R:
ACCAATTCCTTCTCCAGCTGC
Band lengths:
112-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types