RnoEX0033405 @ rn6
Exon Skipping
Gene
ENSRNOG00000002039 | Evi5
Description
ecotropic viral integration site 5 [Source:RGD Symbol;Acc:2322879]
Coordinates
chr14:2960528-2963276:+
Coord C1 exon
chr14:2960528-2960581
Coord A exon
chr14:2962586-2962618
Coord C2 exon
chr14:2963176-2963276
Length
33 bp
Sequences
Splice sites
3' ss Seq
CTAAATTTTTCCTTTTGTAGGAA
3' ss Score
9.5
5' ss Seq
CAGGTATAG
5' ss Score
8.73
Exon sequences
Seq C1 exon
AGGTTACGCACAGAAAACAGGCTTTTAAAACAGCGCATTGAAACACTAGAAAAA
Seq A exon
GAAAGTGCTTCCTTGGCAGATAGATTGATACAG
Seq C2 exon
GGACAAGTGACCAGAGCCCAGGAGGCTGAGGAAAACTACCTCATAAAACGGGAGTTGGCCACCATCAAACAACAGACTGATGCAGCCAGGGCTAAGCTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002039-'40-35,'40-34,41-35
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=0.429
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000061630fB5043
Main Skipping Isoform:
ENSRNOT00000061630fB5047
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTACGCACAGAAAACAGGC
R:
TGTTTGATGGTGGCCAACTCC
Band lengths:
124-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]