HsaEX0023363 @ hg19
Exon Skipping
Gene
ENSG00000067208 | EVI5
Description
ecotropic viral integration site 5 [Source:HGNC Symbol;Acc:3501]
Coordinates
chr1:93101759-93131549:-
Coord C1 exon
chr1:93131496-93131549
Coord A exon
chr1:93128977-93129009
Coord C2 exon
chr1:93101759-93101893
Length
33 bp
Sequences
Splice sites
3' ss Seq
CTGAATTTTTCCTTTTGTAGGAA
3' ss Score
10.16
5' ss Seq
CAGGTATAG
5' ss Score
8.73
Exon sequences
Seq C1 exon
AGGTTACGCACAGAAAATAGACTTTTAAAACAGCGCATCGAGACATTAGAAAAA
Seq A exon
GAAAGTGCTTCCTTGGCAGATAGATTGATACAG
Seq C2 exon
CATAAATGCAGTTCCAACTACAACGAAGATTTTGTGCTACAGCTAGAGAAGGAATTGGTCCAAGCCCGACTGAGTGAAGCTGAGTCTCAGTGTGCATTAAAAGAGATGCAGGATAAAGTCTTGGATATAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000067208_MULTIEX1-11/18=10-13
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.045 C2=0.089
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF065706=DUF1129=PU(95.3=91.1)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACAGCGCATCGAGACATT
R:
GACTCAGCTTCACTCAGTCGG
Band lengths:
114-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)