HsaEX0023365 @ hg38
Exon Skipping
Gene
ENSG00000067208 | EVI5
Description
ecotropic viral integration site 5 [Source:HGNC Symbol;Acc:HGNC:3501]
Coordinates
chr1:92625794-92665992:-
Coord C1 exon
chr1:92665939-92665992
Coord A exon
chr1:92636202-92636336
Coord C2 exon
chr1:92625794-92625934
Length
135 bp
Sequences
Splice sites
3' ss Seq
TGTATGTCTGTAACCTTTAGCAT
3' ss Score
6.14
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
AGGTTACGCACAGAAAATAGACTTTTAAAACAGCGCATCGAGACATTAGAAAAA
Seq A exon
CATAAATGCAGTTCCAACTACAACGAAGATTTTGTGCTACAGCTAGAGAAGGAATTGGTCCAAGCCCGACTGAGTGAAGCTGAGTCTCAGTGTGCATTAAAAGAGATGCAGGATAAAGTCTTGGATATAGAGAAG
Seq C2 exon
AGGAATAACTCCCTTCCTGATGAGAATAATATTGCAAGGCTTCAGGAAGAACTCATTGCTGTGAAACTTAGAGAAGCAGAAGCCATTATGGGTTTGAAAGAACTTAGACAGCAAGTCAAGGATTTAGAGGAACACTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000067208-'42-100,'42-97,49-100
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=0.088 C2=0.191
Domain overlap (PFAM):
C1:
NO
A:
PF065706=DUF1129=PU(95.3=91.1)
C2:
PF065706=DUF1129=PD(0.1=0.0)
Main Skipping Isoform:
ENST00000491940fB2454
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTTACGCACAGAAAATAGACT
R:
TGCCAGTGTTCCTCTAAATCCT
Band lengths:
194-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development