BtaEX6016588 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011363 | EVI5
Description
ecotropic viral integration site 5 [Source:HGNC Symbol;Acc:HGNC:3501]
Coordinates
chr3:50962144-50990414:+
Coord C1 exon
chr3:50962144-50962176
Coord A exon
chr3:50984562-50984696
Coord C2 exon
chr3:50990274-50990414
Length
135 bp
Sequences
Splice sites
3' ss Seq
TGTATGTCTATAACTTGTAGCAT
3' ss Score
5.86
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GAAAGTGCTTCCTTGGCAGATAGATTGATACAG
Seq A exon
CATAAATGCAGTTCCAACTACAATGAAGATTTTGTGCTACAGCTGGAGAAGGAATTGGTCCAAGCCCGACTGAGTGAAGCTGAGTCTCAGTGTGCACTGAAGGAAATGCAGGATAAAGTTCTGGATATAGAAAAG
Seq C2 exon
AGAAACAACTCCTTTCCTGATGAGAATAACATTGCAAGACTTCAGGAAGAACTCATTGCTGTGAAACTGAGAGAAGCAGAAGCTATTATGGGTTTGAAAGAGCTTAGACAACAAGTCAAGGATTTGGAGGAACACTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011363-'20-20,'20-18,22-20=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.052 C2=0.177
Domain overlap (PFAM):
C1:
NO
A:
PF065706=DUF1129=PU(93.2=91.1)
C2:
PF065706=DUF1129=PD(2.3=2.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGTGCTTCCTTGGCAGAT
R:
TGCCAGTGTTCCTCCAAATCC
Band lengths:
173-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]