HsaEX0023381 @ hg19
Exon Skipping
Gene
ENSG00000142459 | EVI5L
Description
ecotropic viral integration site 5-like [Source:HGNC Symbol;Acc:30464]
Coordinates
chr19:7920901-7923217:+
Coord C1 exon
chr19:7920901-7920954
Coord A exon
chr19:7921978-7922010
Coord C2 exon
chr19:7923077-7923217
Length
33 bp
Sequences
Splice sites
3' ss Seq
GAACCCCCTTCGCCGGGTAGGAG
3' ss Score
4.72
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
AGACTTCGGACGGAGAACCGGCTCCTGAAACAGCGGATTGAAACCCTAGAGAAG
Seq A exon
GAGAGCGCTGCTCTGGCTGATAGGTTAATCCAG
Seq C2 exon
GGGCAAGTGACACGGGCGCAGGAGGCGGAGGAGAACTACGTCATCAAGCGGGAGCTGGCGGTGGTGCGGCAGCAGTGCAGCTCGGCGGCCGAGGACCTGCAGAAGGCACAGAGCACCATCCGGCAGCTACAGGAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142459_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.255
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCGGATTGAAACCCTAGAGA
R:
TTCTGCAGGTCCTCGGCC
Band lengths:
128-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)