HsaEX0023381 @ hg38
Exon Skipping
Gene
ENSG00000142459 | EVI5L
Description
ecotropic viral integration site 5 like [Source:HGNC Symbol;Acc:HGNC:30464]
Coordinates
chr19:7856015-7858331:+
Coord C1 exon
chr19:7856015-7856068
Coord A exon
chr19:7857092-7857124
Coord C2 exon
chr19:7858191-7858331
Length
33 bp
Sequences
Splice sites
3' ss Seq
GAACCCCCTTCGCCGGGTAGGAG
3' ss Score
4.72
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
AGACTTCGGACGGAGAACCGGCTCCTGAAACAGCGGATTGAAACCCTAGAGAAG
Seq A exon
GAGAGCGCTGCTCTGGCTGATAGGTTAATCCAG
Seq C2 exon
GGGCAAGTGACACGGGCGCAGGAGGCGGAGGAGAACTACGTCATCAAGCGGGAGCTGGCGGTGGTGCGGCAGCAGTGCAGCTCGGCGGCCGAGGACCTGCAGAAGGCACAGAGCACCATCCGGCAGCTACAGGAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142459_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=50%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.255
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCGGATTGAAACCCTAGAGA
R:
TTCTGCAGGTCCTCGGCC
Band lengths:
128-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development