RnoEX0033430 @ rn6
Exon Skipping
Gene
ENSRNOG00000001034 | Evi5l
Description
ecotropic viral integration site 5-like [Source:RGD Symbol;Acc:1561962]
Coordinates
chr12:2593378-2595609:-
Coord C1 exon
chr12:2595556-2595609
Coord A exon
chr12:2594496-2594528
Coord C2 exon
chr12:2593378-2593518
Length
33 bp
Sequences
Splice sites
3' ss Seq
GAATCCCCTTCGCCTGGTAGGAG
3' ss Score
5.3
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
AGGCTTCGAACAGAGAACCGGCTGCTCAAACAGCGGATTGAGACCCTAGAGAAG
Seq A exon
GAGAGCGCGGCCTTGGCTGATAGGTTAATCCAG
Seq C2 exon
GGACAAGTGACACGGGCACAGGAGGCTGAGGAGAACTATGTCATCAAGCGGGAGTTGGCAGTAGTGAGACAACAATGTAGCTCGACTGCAGAGGACCTTCAGAAAGCACAGAGTACCATTCGGCAGTTGCAAGAACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001034_MULTIEX1-4/5=3-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=0.091 C2=0.383
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000001367fB5048
Main Skipping Isoform:
ENSRNOT00000001367fB5049
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAACAGCGGATTGAGACCCT
R:
TCCTCTGCAGTCGAGCTACAT
Band lengths:
123-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]