RnoINT0056988 @ rn6
Intron Retention
Gene
ENSRNOG00000001034 | Evi5l
Description
ecotropic viral integration site 5-like [Source:RGD Symbol;Acc:1561962]
Coordinates
chr12:2592809-2595609:-
Coord C1 exon
chr12:2595556-2595609
Coord A exon
chr12:2592938-2595555
Coord C2 exon
chr12:2592809-2592937
Length
2618 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
ATGCAGTTCTTTGCTTCCAGGAA
3' ss Score
6.97
Exon sequences
Seq C1 exon
AGGCTTCGAACAGAGAACCGGCTGCTCAAACAGCGGATTGAGACCCTAGAGAAG
Seq A exon
GTGAGGGGTGTGGGTACCAGCTGCTGGGTTCCAAATCTTTGCCTCAGAACACCCGGTAGCTATTAAGGCTGGGACCATCCCTCTGTTCTGAGGTAGCAGACTTAAGAAGCACGGGTAGGGCAGGCATATTGGTTGTGCTCTTGTAATGTCAGTGTACAGGAGGTAGAGGCAAGAGGATTAAGAATTCAAGGCCAGCTAGCCTTAGCTACATGAGACCCTGTCTCAACAAACTATATGAGTGGCCTTTCCTTCAGTCTCCCCTAACCCCACCGAGATTTGGACTGCCCTGTTATTAGGGGTTCTCAGAAGACTTCATCCCACTCTGGATCTCAATTCAGCCCCTAGGGTTACAGCTAAATTACAACTCAGTGGATGGCAGTCACAAGCTGCGTGGGTGGGAGAACGAGTCCCATCACTGGGCCACAAGGAGTCCAAACCTGTAATTTGTAAGTTCATCCTAGAAAGGAAGGAAAGCAGACAGAATGAAGGAAGCGGAGGTGGGGGGTGGGGGGAGGTTGCTTGAGGTAGAGAGGCACGGACTTGACCGGGGGCCCTACTAGGTCACTGCTGGGGTGGTTCAGGTGACTTAGCATGACTCTGGGCCCTACTTCCTGTTCCTTAGTGTTGCTGAGCACAAGGAAGCAGTAGTTCATGGACAGGGTGCTGTTACTACAACAGAAGCCTCAATTCTTGTTCTCTCAAGATTAAAATGCGTCCCCTGTCCCGGCCCTCTCTGGGACCTCCTCCTCACACACAGTACAGAGACCTTCCTGAGTTTTCTCAGCCCAGTGCACCCCAACCTCCGCACTCACATGACCCCCCTCCAGGACAGAGTTGGCTCTGGCTTTGGTCTTTCTCTGGGCCCTCCTCCACTGGTCCTCTGGCCTTCACCTTTCTATCCCTTGCTTCTAGAGATAGCCCACTGCATTAGTGACAAGTGGTTCTTGTCTGTCTCTCCCCCTCTCCTGTCCCCTGCCTTCTGCTCTGCCTCCTTCCCCCGTTGCTGGGAATCCCCTTCGCCTGGTAGGAGAGCGCGGCCTTGGCTGATAGGTTAATCCAGGTACTGTAGCTTTTCCATATACCTCTGCACTCTCCATTCCAGGCCCTTCCCGGGTCCCTGCACAAGACAGCCAGTAACCACCTCTTTCCTGGCCACTGCCATTCTGGGGGGCAAGAGCAACTTGCATGGAGGGGGTGGCTTCCAGGGAGAACAGTGCCTTGAGGGAGGGGGCATGTGATCTGGAGACAAACACCAGGATGGGAGGCACGTGTGGGAGTGAGCTTAGGAGAAAGCTTACACTCAGCATAGACAGAGGCTTCCTCCACCAAGGAGCAAGAGATGCTACCCCAGCAGGACTCAGGACCCTCAGAGCATTCGTCTTTAGGTCCTGACACATTTGTTGTGCTGAGCTTACACTAACATGCTCACAAACAGGCATGGAGGCATGCAGGCACACACGTAGCTGTTCTGACACCTCTCTGCTTCTGCCTATCACCCATCACCATCTCTCACTCGCCTGCTCCTGCTGCTGCTTCATTCTTGGATGGCTTTTCTAGAAGCTTCTGCACAGCACCTAGTGACTCCGAGCCTGGGATGGGGACAGGGAAGATGGAGTTGGGTGGGAAGTAGGATGTGGGTGGAGGAAATGCCCTGGGGAGTGGTAGAGGTGTCTTACACCTCTCACAAGCCTTTGCCTTTGTAGAGCAATTTTTTTCTTCATTTCGGACAGAGGCAAACAACCAGGATTGGGGATGGAGCCCAAGCCTGGGAGTTGGGGGCATTTGTCATTTAAGCCTGGTAGCACATCCAGAATGTCCATTACTCCCAGGATCCAGTAGGTGGCCTGTCCTTGCCTGTCTCCACCCAATACACTCTGAGGCCTGCTGTGGGCACCCCATCCCAGGTTCTGAGCATGAAAGGCCATGCCTGTCTCACTTTAACCCTCTCTCATCCTCTCTGAGCTTCCTAGTGGCCAGGCCTGAGACCAAAGCAGATGGTCATGGTATTCTTCCCACCCCCATCCTCACTGTGCTCAGGGACAAGTGACACGGGCACAGGAGGCTGAGGAGAACTATGTCATCAAGCGGGAGTTGGCAGTAGTGAGACAACAATGTAGCTCGACTGCAGAGGACCTTCAGAAAGCACAGAGTACCATTCGGCAGTTGCAAGAACAGCAGGTACCAGGCTGTTGAATGGGGTTGACTAGCAGGACCACACCTCCTACAAGCCTATGTGCCACCCTTACCTTCTGACCCTCATGGCTTAGATCTGTAAGGTGGGTTAGTGTGCCCAGAGGCTAATGTGAATGCAATGCCAGCTCCACTCCACAGCCAGCTCCACTCCAGGAGTCTATGTCCCACCCCTAGCCCACTGTCCCAGACTGAGTCTCGAAGGCTTTCAGAAGGTGCCCTGAAGTCATGGAAAGTCCCATTCCCAACATCCCCTCATGCATCTTCCCTGGGAAGACGCCAAGCCAAGCTAGAGTCACGAAGTTAGCACGGGTTCAACTCAGGCTCCCTAACATCTGGGAACCTCTTCCAACCCAGGCTCTCTAGCATGAAGGCTATCCACCGGGTAGCAGTCTCCACCAGGAACCAATGCAGTTCTTTGCTTCCAG
Seq C2 exon
GAAAACCCTCGCCTAACAGAGGACTTTGTTTCCCACCTGGAGACAGAACTGGAGCAGTCACGGTTACGGGAGACCGAGACTCTGGGGGCCCTTCGAGAAATGCAGGACAAAGTTCTGGACATGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001034:ENSRNOT00000001367:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=NA C2=0.592
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]