BtaINT0058317 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004294 | EVI5L
Description
Bos taurus ecotropic viral integration site 5-like (EVI5L), mRNA. [Source:RefSeq mRNA;Acc:NM_001099075]
Coordinates
chr7:17858050-17861173:+
Coord C1 exon
chr7:17858050-17858190
Coord A exon
chr7:17858191-17861044
Coord C2 exon
chr7:17861045-17861173
Length
2854 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCA
5' ss Score
7.88
3' ss Seq
AGCTCTCTGCCTGCCCCCAGGAT
3' ss Score
10.15
Exon sequences
Seq C1 exon
GGGCAGGTGACACGCGCACAGGAGGCAGAGGAGAACTACGTCATCAAGCGGGAACTGGCTGTGGTGAGGCAGCAGTGTAGCTCGGCAGCCGAAGACCTGCAGAAGGCGCAGAGCACCATACGGCAGCTGCAGGAGCAGCAG
Seq A exon
GTACCAGGCCGGTGGCGGGGCCCAGGGCCAGGCCACGCCCTATGCCTGGCTGCCTGCAGAGCTCTGGGGCACCTGGCCCCAATCAGCCCTGGCCCTCCTGTTCCTTCCTTGGGGACAGGGGACCCAGAGTCTCCTCCAGCCCCACACCCGGGGCGATCCTGTGGTTTCCCTTTCCCACCCCGCAGTGGGGCATCCGGCCTACCATATTACCACACTGAGGGCAAGACAGTCAGCCTCCACCCATCCCCCAACTGTCCCTGCAGGGACCCCGCCCTCCACTGATAGATCTGTGATTCCTTGGGGGAGCCTTGATGTCTCCCCAGGGTCTGAAGGGCTGTTGGGCTGTTACCAAACCAAACCTAGGTCCACTCATCTGACATGCAGCAAAACCAGCTACCAACACGGCTTGTGGTGAAGGAAACCACAGCATCTTCTGCAAACAAGGAGAAAGGGCAGCTCATGCTCAAAAGAACCCAGAAAGTCCCTGATGCCTTTTCAGCAGGGGATTTTTTAGTATTTTCATTTATTTATCTGGCTGAATCAGGTCTTGGTAGTGGCACTCGGGACCTTCCGTCTTCACTGCAGCACGTGGGATCTCTAGTTGCAGCATGTGAACTCTTAGTGGTGGAATGTGGCATCTGGGTCCCCAACCAGCGATCAAACCCAAGCCCCCTGCATTGGGAATGTGGAGTCTTAGCCACTGGACCCCCAGGGAAGCCTCTAGGCAGGGTCTTTTTTTAGGACAGTGCCAGAGGAAAGGGTCCAAGGACACAGGGTCAGCTCGTGGACCTTCTTCTGATTGGTTGGTGGTGAGGAAACAGGGTCATGTTTAGGGAACCTCAGTCATCATCAACCCTCTTGCTACAACCAGTCTGGGGTCTGGTGCTGCTGGTCAGTGTGTAGTCACCATGCTCCACCTGGCTGGGGCTCTTAATTTCTGCAGAAGAACTCAAAGACCCATGTCAAGTAGTTATCTCTACTCCTTCAGGAGGGCCTAGGCATCCTGGGACTCTATGATCCTCATCATTTACTGCCTGAGGCTGCTTTCTGGAACTCAGCAGAGGTCTTGGAGACTACAGCCTTTTTCTACAAACAAGAAACAGGGACACGGAAGGGCTTTTGTACCCAGGAGGGCCCACGGGATCCTGCTTGGTTTCAGCCCGCCATTTTCTTTGAAACTCAAGGGAGGCACAGGAAAGGCAATAAAGTTTTGGGGGATAGAGAGGTTAATCATACACTCGGGGGGGGAGCTCAGTTTCAGGGCTTCCTCAGGGGGTGGGTAGGCAGCCATGCATGGTAGGAGCTGGGGTGAGGGAGGGTAACCCCCTCCAGTGCCCAACACCTTGCCCTCAGAAGAGGGTCTGGTCTGTGCCCGCCACCCTGAGCTAATGGGTTGGAGATGAGGTGGGGGCAGCCCAAGTCTGTTTTGGAGTCATGAACTCAGGTGGGTGGTGGAGAGCCCATGAGCTGAAGCATGGCAGAGTCCACTTCTCCCAAAGAAGGCTTCCAGAACTCTCCTCCAGCCACACCCAGCAGCTGCCTTCCTGATGTGGTAACACACTGGCAGCTGTGGCCTCCAAACTCAGCAGGTATGACTGAGCACAGGCCCTGAGGGGCAGGGAAGGGCGCTGTCGGCTCCCCATACCCCAGGGCTGAACCAGCAGGGCCTGGCAGTGAGGTGAGGGTCCCTGATGTGGAGAAACCACAGGGTGCTTGAGAAAGGGTGAAGAGAAGGAATGGTCATTGGCTGAGGAGAATCCCTCCCCTACGTGTTGACCCTCTGCTCCTGGGGACAGAGGGGCAGAACTTCACTATTGCTGACCCGCATCCACCTCTGGCTCAAGTTCAAGTGCTATAGCCCCACCTGGCTTTAAAGCAGCCAGGCCAGTGGGGAAGCTGAGGCTGGGCTAACCCTACCCATGGCACAATGCCCTCCATCAGGCCAGTTGGAGAGACATTCACCTGCCCCCTCAGGGCTCCTGCCCTTAGGCCTGCTGCAGAGCTGGGTGAGGCAGGGAGGTCACTGCAAGGCAGAGGGAGGCCGGGAGGGAGTGTGGGAGATGCTGGTGGGGCCCCTGGAAGAGATGCAGCCGGGCAGAGCTGCCACGGGGCCCAGAGCCCATCTGGGCCGAGAGAGAGCCACCCACACCCCTGGACTTCAGAGACCCCCAGTGGTCAAGGGTAGCAAGCAGACCTGGGCAGTTAGGCAGGAGGGCCCCATAAATAAGAACTGGTCAGTGGGGAAACAGGGGGTGGGGCAGCTGAAGAGCAAGGTGGCTGGGGCAACTTGCCAGAGAACTGCCCTGCCAGGCCACCCAGGCAGCAAGATGCAGGCTGTGCTCCGACCCCAGGGGCTTCCTCCCTCACTGTCGAGGTCTTCTGTATGGGGCCCACCCATCACCCCTGGGACTCCCAGGTACCTCTGAGAAGCCCCTGGACACTGACCAAGAAAGTGGTCTCAGCCAACTCTTTCCCCATCTGCCCCTCACAACCCCCATGGTGTGGTCAGGCCACAGACCACACAGCAGGAAGCAGCGCCCAGAGAACTCGTTCTGCATACTCACCCCAGTGATCCTGTGAACCAATCATTGGTGTACCTCAGGGGGCCTCCTGAGGCCATGTGTGGTGTCCCCAGGACCCCAAGACAAAGCATCAGGGCCCCCGTGGTGTTCTGCCCTTCCAGGGGATATGGGCTTTCTCCTTGCCCTCCTCTCCACCCACAACCTAAGCCCCCACTCCTGGCCATGGGGGTGGAAGAGGTGGGACCAGGCCTGGGCCCTCACCTGGCTGGCAGGAAAGCTGCCCACCTCTGGCCACAGCCTGTCGCCCAGCACAGCTCTCTGCCTGCCCCCAG
Seq C2 exon
GATAACCCGCGCCTCACCGAGGACTTTGTGGCCCACCTGGAGACGGAGCTGGAGCAGTCACGGCTTCGGGAGACCGAGACCCTGGGGGCCCTTCGGGAGATGCAGGACAAGGTTCTGGACATGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004294:ENSBTAT00000052616:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.170 A=NA C2=0.628
Domain overlap (PFAM):
C1:
PF0222217=ATP-grasp=FE(37.1=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]