MmuINT1009814 @ mm10
Intron Retention
Gene
ENSMUSG00000011832 | Evi5l
Description
ecotropic viral integration site 5 like [Source:MGI Symbol;Acc:MGI:2442167]
Coordinates
chr8:4202936-4203642:+
Coord C1 exon
chr8:4202936-4203076
Coord A exon
chr8:4203077-4203513
Coord C2 exon
chr8:4203514-4203642
Length
437 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
ATGCAGTTCTTTGCCTCCAGGAA
3' ss Score
7.42
Exon sequences
Seq C1 exon
GGGCAGGTGACACGGGCACAGGAGGCTGAGGAGAACTATGTCATCAAACGGGAGTTGGCAGTAGTGAGACAACAGTGTAGCTCGACTGCAGAGGACCTTCAGAAAGCACAGAGTACCATTCGGCAGTTGCAAGAACAGCAG
Seq A exon
GTACCCGGCGGTTGAATGGGATTGACTGGCAGGACCACACCTTCTACAGGCCTACGTGCCACCCTTGCCTGCTAGCCCTCAGGGCTTAGATCTGTAAGGTGGGTGAGGGTGCCCCTCACAGCCAGCTCCACTCCAATCTGGCCATACTGCAGGAGCACATGCCCCACCCCAGCCCATGGTCCTGGGACTGAGTCTTGAAGACTTTCAGAAGGCACCCTGAAGTCATGGAAAGTCCCATCCCCAACATTCCCTCTGTGCAGCTTTCCCTGAAAAGAAGCCAAGCCAGTTTCACGGCCTTCTAGTGCCATGAACTTAGCATGGGTTCAACCCAGGATGCCTAACAACTGGGACCCTCTTCCAGCCCAGGCCCACTAGCTTGAAAGCTATCCACCAAGTAACCGTCACCATCAGGAACCAATGCAGTTCTTTGCCTCCAG
Seq C2 exon
GAAAACCCTCGCCTCACAGAGGACTTTGTGGCCCACCTGGAGACAGAACTGGAGCAGTCACGGTTACGAGAAACAGAGACTCTGGGGGCCCTTCGAGAAATGCAGGACAAAGTTCTGGACATGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011832:ENSMUST00000176149:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.351 A=NA C2=0.581
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTGACACGGGCACAG
R:
TCCATGTCCAGAACTTTGTCCTG
Band lengths:
263-700
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types