HsaINT0058468 @ hg38
Intron Retention
Gene
ENSG00000142459 | EVI5L
Description
ecotropic viral integration site 5 like [Source:HGNC Symbol;Acc:HGNC:30464]
Coordinates
chr19:7858191-7860689:+
Coord C1 exon
chr19:7858191-7858331
Coord A exon
chr19:7858332-7860560
Coord C2 exon
chr19:7860561-7860689
Length
2229 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
CAGCTCTCTGCCTCCCCCAGGAG
3' ss Score
7.62
Exon sequences
Seq C1 exon
GGGCAAGTGACACGGGCGCAGGAGGCGGAGGAGAACTACGTCATCAAGCGGGAGCTGGCGGTGGTGCGGCAGCAGTGCAGCTCGGCGGCCGAGGACCTGCAGAAGGCACAGAGCACCATCCGGCAGCTACAGGAGCAGCAG
Seq A exon
GTAGGGGCGGGTGTGCGGGGCTGCTGGGCGGGGCCATGACCCGCGCCCCCGCCCCCGCCCAACGGTTTTCTTTCAGGGCTCATAATCTGCCCCGCCTCAGCACCTGGCCCTCCTGTTCCTTTCTGGGGTAAGGGGAACCCAGAGACAAGCGCAGATTCTCCCCCAGCAGCTCCACATTCTGAGACATCCTGATATCCATTTCTTGCCACCTCATAGTGTGTCTGCAGTATCTGACTTCCCAACCCCCAGCCTCAGCACGGAGGCCTCTGAAGACCGGGCTGTCCCTGCAGGGTTTCCTCTGTGTCACAGGCAGCAGACAGGGCTGTGACTCCTTACGGAGGCTCTTGCCTGTCCCCAGGGTCTGAAGGATTGTTAGGTGTCCCTGGGGGGCCAGCCATGGAGAATGGGAGCAGGGCAGTCCGGGACTGTTTGGGGAGCTCTGAGCCAGCAGGGTGGGGCTGAGGGGGCACCTTGAGTGTCTTGAGGGCCATGAACTTTGGGTCCCATGATGGGCAGGCCCATGAGTGGGGCCCCACCCCAAGATTTTCTTCTCCTGAAAGCTTTTAGAACTTAACTGCGACCTGGTGCAGTGGCTCACGCCTTAATCTCAGCACTTTGGGAGGCTGAGGCAGGTGGATCACCTGAGGTTAGGAGTTCGAGACCAGCCTGGCCAACATGATGAAGCCCCATCTCTAATAAAAATACAAAAATAAGCTGGGTATGGTGGTGCGCACCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCACTTGAACCCGGGAGGTGGAGGTTGCAGTGAGCCAAGATGGCACCACCGCACTCCAGCCTGGGTGACAGAGCAAGACTCCATCTCAAAAAAAAAAAAAAAAAAAACTTAACTGCAGCTGCACTCAGCAGTTGGCCTTCCTGATCGCAGGGACCCCCAGTGGCTGCAGTCCTAAGCCCTGCAGGCCACAGGGACACATGCCCTGGAGGGGCCGGGAGCGACGCTGTAGGTCCCGCTGCCATCCTGGCCTGACCCAGCAGGGCCTGGCAGTGGGGTGTAGGTTGGAGAAACCATGGAGTGCTTGAGAAAGAAGAGCCATCCAATACAGAGGTGCCCCCTCCGCCCCCAGGCCCAGAGACTGTGGCTCAAGCCTTGGCCCAGGGATTCTAGCGGATCCACTGCTCCTGGGGAGAAGGAGAGCTTCACTGTTTCTCACTTGTCCCCATGAACCACATCCGTATGATGCTGGCGTTGTGGCCCTCAGAGTCTGTGAGCACTCTTGTCCCACCTTGCTCTGAGGCAGCATGGACATTAGGGAAACTGAGGCTGGGCTCATCCCACCCACTGCATGAGGCCGCCTTTCAGGCTCGTTAGAGAGACTCCACCAGCCACCCCTGAGCTCCAACCTTGGGGGGATGCAGAGATCGGGGAGGCCCAAGGCCACCTCCTCAGGCCCAAAGGGAGGCCACTGCAGGCAAGATGAGGTGGCCCAGAGGAGCCACATGGGGCCTGGAGGCCATCTGGGCCGAGGCAGAGCCACCGTCACACGTGGATCTCAGAGACCCACAGGAAGAGGATGGTGGCTGGGAGGGCTGAGGCAGTCCCCCAGAGAACTGTCCTGCCAGGCCACAAGGTCAGTGAGAGGGAGCCCGGCTCCCACCCCAGGGACCAGGTGTCCTTTTTCAGGTCCAGGTGGCAGTGTCCATCACTCCAGGGGCCCCCACTGGGGAACTTCTGAGAAGCCAGGGCATGGAGCAAGAGGGTGATACCCACAAACTCTTTCCTCATCCTTCCCTGATTTGAAATGGAGGGTGGGATGCAGAGGAGAGAGGTGGAAAGACAGGTGCACAGCCCCAGGCCTCTCCCCCACCCCCTGCCTCGCCCACCATGTGGCTGGAACGGTGACCACCCAGCAAGAACCCATCTCCCACCCTCACCAGTGATCCCGGAAAACCAGTCACTGGGGTCCCGCGGGGCATCCGAAGGCCAAGGCAAGTCACCTTTCAGAATGTCCCCTCTGTGCAGCCTTTCCAGGAAGGAAGCTGGACCGGGCCAGCTGCATGGATGCCAGGACCTCTAGGCCCTGAGCATCAGGGGGTCCAGCCCAGGACACCCCAAGCCTGGGCCCCTCTCCCTGCTGAAGGGCTCTGGGGAGGCGGGGAGAAGCCAGCAGGCATGGAGGCTGCCCATCCCCCAGCCATGGCCTGGGGCCCCACGCAGCTCTCTGCCTCCCCCAG
Seq C2 exon
GAGAACCCCCGCCTCACAGAAGACTTCGTGTCCCACCTGGAGACCGAGCTGGAGCAGTCGAGGCTGCGGGAGACGGAGACACTGGGGGCCCTTCGGGAGATGCAGGACAAGGTTCTCGACATGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142459:ENST00000270530:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.255 A=NA C2=0.683
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development