RnoEX0033429 @ rn6
Exon Skipping
Gene
ENSRNOG00000001034 | Evi5l
Description
ecotropic viral integration site 5-like [Source:RGD Symbol;Acc:1561962]
Coordinates
chr12:2593378-2601350:-
Coord C1 exon
chr12:2601290-2601350
Coord A exon
chr12:2595556-2595609
Coord C2 exon
chr12:2593378-2593518
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTCTTCCTCTATAGAGG
3' ss Score
9.73
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GCTGGAGAAGGAGTACGCAGCTATGAAGAGTAAGGAGATGGAGGAGCAGATCGAGATCAAA
Seq A exon
AGGCTTCGAACAGAGAACCGGCTGCTCAAACAGCGGATTGAGACCCTAGAGAAG
Seq C2 exon
GGACAAGTGACACGGGCACAGGAGGCTGAGGAGAACTATGTCATCAAGCGGGAGTTGGCAGTAGTGAGACAACAATGTAGCTCGACTGCAGAGGACCTTCAGAAAGCACAGAGTACCATTCGGCAGTTGCAAGAACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001034_MULTIEX1-3/5=2-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.076 A=0.056 C2=0.383
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000001367fB5049
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGATGGAGGAGCAGATCG
R:
TCTGAAGGTCCTCTGCAGTCG
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]