BtaEX6038425 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004294 | EVI5L
Description
Bos taurus ecotropic viral integration site 5-like (EVI5L), mRNA. [Source:RefSeq mRNA;Acc:NM_001099075]
Coordinates
chr7:17853067-17857020:+
Coord C1 exon
chr7:17853067-17853127
Coord A exon
chr7:17856108-17856161
Coord C2 exon
chr7:17856988-17857020
Length
54 bp
Sequences
Splice sites
3' ss Seq
CCCTCTTCCCCCCACTACAGAGG
3' ss Score
8.81
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GCTGGAGAAGGAGTATGCGGCCATGAAGAGCAAGGAGATGGAGGAGCAGATTGAGATCAAG
Seq A exon
AGGCTTCGGACGGAGAACCGGCTCCTGAAGCAGCGGATCGAGACCCTGGAAAAG
Seq C2 exon
GAGAGCGCTGCTCTGGCTGATAGGTTAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004294-'11-18,'11-16,13-18=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0222217=ATP-grasp=FE(16.1=100)
A:
PF0222217=ATP-grasp=FE(13.7=100)
C2:
PF0222217=ATP-grasp=FE(8.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAGAAGGAGTATGCGG
R:
GTATTAACCTATCAGCCAGAGCAGC
Band lengths:
92-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]