HsaEX6092531 @ hg19
Exon Skipping
Gene
ENSG00000142459 | EVI5L
Description
ecotropic viral integration site 5-like [Source:HGNC Symbol;Acc:30464]
Coordinates
chr19:7918159-7923217:+
Coord C1 exon
chr19:7918159-7918219
Coord A exon
chr19:7920901-7920954
Coord C2 exon
chr19:7923077-7923217
Length
54 bp
Sequences
Splice sites
3' ss Seq
ATCTCCCCCCACCCCCATAGAGA
3' ss Score
7.64
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GCTGGAGAAGGAGTACGCAGCCATGAAGAGCAAGGAGATGGAGGAGCAGATCGAGATCAAA
Seq A exon
AGACTTCGGACGGAGAACCGGCTCCTGAAACAGCGGATTGAAACCCTAGAGAAG
Seq C2 exon
GGGCAAGTGACACGGGCGCAGGAGGCGGAGGAGAACTACGTCATCAAGCGGGAGCTGGCGGTGGTGCGGCAGCAGTGCAGCTCGGCGGCCGAGGACCTGCAGAAGGCACAGAGCACCATCCGGCAGCTACAGGAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142459-'9-11,'9-9,10-11=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=0.000 C2=0.255
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGATGGAGGAGCAGATCGA
R:
GATGGTGCTCTGTGCCTTCTG
Band lengths:
148-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)