DreEX6032808 @ danRer10
Exon Skipping
Gene
ENSDARG00000052766 | EVI5L
Description
ecotropic viral integration site 5-like [Source:HGNC Symbol;Acc:HGNC:30464]
Coordinates
chr1:44548662-44550234:+
Coord C1 exon
chr1:44548662-44548722
Coord A exon
chr1:44549063-44549116
Coord C2 exon
chr1:44550094-44550234
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTTTGTATTAATTTTAACAGAGG
3' ss Score
5.89
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATTAGAAAAGGAATATACTACCATTAAGAACAAGGAGATGGAAGAACAAATTGAGATTAAG
Seq A exon
AGGCTACGTACAGAAAATAGATTACTGAAGCAGAGGATTGAAACACTGGAAAAG
Seq C2 exon
GGTCAAGTGACGCGAGCCCAGGAGGCAGAGGAGAACTACGTTATTAAGCGTGAATTGGCTGTGGTCCGGCAGCAGTGTCATACAGCCAGCGAGAGTCTGGAGAAAGCACAGGATACTATACGTGAACTTCAGCAACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052766-'9-11,'9-9,10-11=AN
Average complexity
A_C2
Mappability confidence:
89%=100=80%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=0.000 C2=0.177
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACAAGGAGATGGAAGAACA
R:
GTGCTTTCTCCAGACTCTCGC
Band lengths:
144-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]