MmuEX6034204 @ mm9
Exon Skipping
Gene
ENSMUSG00000011832 | Evi5l
Description
ecotropic viral integration site 5 like [Source:MGI Symbol;Acc:MGI:2442167]
Coordinates
chr8:4193306-4201966:+
Coord C1 exon
chr8:4193306-4193366
Coord A exon
chr8:4200868-4200921
Coord C2 exon
chr8:4201934-4201966
Length
54 bp
Sequences
Splice sites
3' ss Seq
CTCTTCTTCTTCCTCTGTAGAGG
3' ss Score
10.22
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GCTGGAGAAGGAGTACGCAGCTATGAAGAGTAAAGAGATGGAGGAGCAGATCGAGATCAAA
Seq A exon
AGGCTTCGAACAGAGAACCGGCTGCTCAAACAGCGGATTGAGACCCTAGAGAAG
Seq C2 exon
GAGAGCGCGGCCTTGGCTGATAGGTTAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011832-'11-13,'11-12,12-13=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGAAGGAGTACGCAGCT
R:
TGGATTAACCTATCAGCCAAGGC
Band lengths:
92-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: