HsaEX6092531 @ hg38
Exon Skipping
Gene
ENSG00000142459 | EVI5L
Description
ecotropic viral integration site 5 like [Source:HGNC Symbol;Acc:HGNC:30464]
Coordinates
chr19:7853273-7858331:+
Coord C1 exon
chr19:7853273-7853333
Coord A exon
chr19:7856015-7856068
Coord C2 exon
chr19:7858191-7858331
Length
54 bp
Sequences
Splice sites
3' ss Seq
ATCTCCCCCCACCCCCATAGAGA
3' ss Score
7.64
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GCTGGAGAAGGAGTACGCAGCCATGAAGAGCAAGGAGATGGAGGAGCAGATCGAGATCAAA
Seq A exon
AGACTTCGGACGGAGAACCGGCTCCTGAAACAGCGGATTGAAACCCTAGAGAAG
Seq C2 exon
GGGCAAGTGACACGGGCGCAGGAGGCGGAGGAGAACTACGTCATCAAGCGGGAGCTGGCGGTGGTGCGGCAGCAGTGCAGCTCGGCGGCCGAGGACCTGCAGAAGGCACAGAGCACCATCCGGCAGCTACAGGAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142459-'17-28,'17-24,19-28
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.063 A=0.000 C2=0.255
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGATGGAGGAGCAGATCGA
R:
GATGGTGCTCTGTGCCTTCTG
Band lengths:
148-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains