MmuEX6034204 @ mm10
Exon Skipping
Gene
ENSMUSG00000011832 | Evi5l
Description
ecotropic viral integration site 5 like [Source:MGI Symbol;Acc:MGI:2442167]
Coordinates
chr8:4193306-4203076:+
Coord C1 exon
chr8:4193306-4193366
Coord A exon
chr8:4200868-4200921
Coord C2 exon
chr8:4202936-4203076
Length
54 bp
Sequences
Splice sites
3' ss Seq
CTCTTCTTCTTCCTCTGTAGAGG
3' ss Score
10.22
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GCTGGAGAAGGAGTACGCAGCTATGAAGAGTAAAGAGATGGAGGAGCAGATCGAGATCAAA
Seq A exon
AGGCTTCGAACAGAGAACCGGCTGCTCAAACAGCGGATTGAGACCCTAGAGAAG
Seq C2 exon
GGGCAGGTGACACGGGCACAGGAGGCTGAGGAGAACTATGTCATCAAACGGGAGTTGGCAGTAGTGAGACAACAGTGTAGCTCGACTGCAGAGGACCTTCAGAAAGCACAGAGTACCATTCGGCAGTTGCAAGAACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011832_MULTIEX3-1/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=0.042 C2=0.351
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAAGGAGTACGCAGCTA
R:
GCAGTCGAGCTACACTGTTGT
Band lengths:
148-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types