RnoEX0033422 @ rn6
Exon Skipping
Gene
ENSRNOG00000001034 | Evi5l
Description
ecotropic viral integration site 5-like [Source:RGD Symbol;Acc:1561962]
Coordinates
chr12:2595556-2601350:-
Coord C1 exon
chr12:2601290-2601350
Coord A exon
chr12:2601045-2601104
Coord C2 exon
chr12:2595556-2595609
Length
60 bp
Sequences
Splice sites
3' ss Seq
CCCCTTCCTTCACCTGCCAGCCC
3' ss Score
7.88
5' ss Seq
TAAACAAGA
5' ss Score
-10.77
Exon sequences
Seq C1 exon
GCTGGAGAAGGAGTACGCAGCTATGAAGAGTAAGGAGATGGAGGAGCAGATCGAGATCAAA
Seq A exon
CCCCGCGTGGGAGCGCATTCCCCAATTGGCATGTCCTCAAAGCTGGCCTCACAACAGTAA
Seq C2 exon
AGGCTTCGAACAGAGAACCGGCTGCTCAAACAGCGGATTGAGACCCTAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001034-'18-15,'18-14,19-15
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.076 A=0.105 C2=0.056
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGAAGGAGTACGCAGCT
R:
TCTAGGGTCTCAATCCGCTGT
Band lengths:
110-170
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]