DreEX0004060 @ danRer10
Exon Skipping
Gene
ENSDARG00000052766 | EVI5L
Description
ecotropic viral integration site 5-like [Source:HGNC Symbol;Acc:HGNC:30464]
Coordinates
chr1:44549063-44550234:+
Coord C1 exon
chr1:44549063-44549116
Coord A exon
chr1:44549554-44549586
Coord C2 exon
chr1:44550094-44550234
Length
33 bp
Sequences
Splice sites
3' ss Seq
CTCCTCTTATGGTGTTGTAGGAG
3' ss Score
8.12
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
AGGCTACGTACAGAAAATAGATTACTGAAGCAGAGGATTGAAACACTGGAAAAG
Seq A exon
GAGAGTGCTGCATTAGCAGACAGGTTGATTCAG
Seq C2 exon
GGTCAAGTGACGCGAGCCCAGGAGGCAGAGGAGAACTACGTTATTAAGCGTGAATTGGCTGTGGTCCGGCAGCAGTGTCATACAGCCAGCGAGAGTCTGGAGAAAGCACAGGATACTATACGTGAACTTCAGCAACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052766_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.177
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000074683fB369
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGAGGATTGAAACACTGGA
R:
CTCGCTGGCTGTATGACACTG
Band lengths:
119-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]