DreINT0010644 @ danRer10
Intron Retention
Gene
ENSDARG00000098237 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr22:4112109-4112429:-
Coord C1 exon
chr22:4112345-4112429
Coord A exon
chr22:4112235-4112344
Coord C2 exon
chr22:4112109-4112234
Length
110 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
TAACGTGTTTCTGTCCACAGATG
3' ss Score
12.07
Exon sequences
Seq C1 exon
NNNNNNGAATTCAAGACTATCTGCCCTCGAGGACCCGGAATCGCCAATCGCGGAGACATTCTGACTGGGAGACCCTTCTACAAAG
Seq A exon
GTAAACAATATTAAAAATTGATTTGCAAGTTGACAAATGTATACGATTTGTTTGCAGTTTTTGTTAGCAGATGACTTTGTGAGTATGCAATAACGTGTTTCTGTCCACAG
Seq C2 exon
ATGTGAATGAGTGTAAGGTGTTTAGGGGGCTCTGCACTCACGGCACGTGTCGAAACACTATCGGCAGCTTCAAGTGTCGCTGTGATAGTGGTTTCGCCCTGACAATGGAGGAGAGGAACTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098237:ENSDART00000167748:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(14.3=20.7),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAAGACTATCTGCCCTCGAGG
R:
CTGTGCAGTTCCTCTCCTCCA
Band lengths:
202-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]