HsaINT0062454 @ hg19
Intron Retention
Gene
ENSG00000138829 | FBN2
Description
fibrillin 2 [Source:HGNC Symbol;Acc:3604]
Coordinates
chr5:127680077-127681276:-
Coord C1 exon
chr5:127681049-127681276
Coord A exon
chr5:127680203-127681048
Coord C2 exon
chr5:127680077-127680202
Length
846 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
TGGCTTCATTCTGCTTTTAGACA
3' ss Score
7.8
Exon sequences
Seq C1 exon
ATATTCGCATGGAGCAGTGTTACTTGAAGTGGGATGAAGATGAATGCATCCACCCCGTTCCTGGAAAGTTCCGCATGGATGCCTGCTGCTGTGCTGTCGGGGCGGCTTGGGGCACCGAGTGTGAGGAGTGCCCCAAACCTGGCACCAAGGAATACGAGACGCTGTGCCCCCGCGGGGCTGGCTTTGCTAACCGAGGGGATGTTCTTACTGGGCGGCCATTTTACAAAG
Seq A exon
GTAACTGCCTGCGGCCAGCGCCTTGGTCCTTCTTCACCAACAGGAAGCCTTCCACATTCTCTGAGAATTGGTTTTGCTTTAAATGTTTGACTTCCCACTTTATTTTCTCAGTTAAACTTAGGTTTTGTGACCAATGTTCTGTCCCAAGAGTATAAATCCCCTATAAGATGGCATTGAAGTAAAGAGATAAAACAGATTGCTTATCTTTCTCTTCTACTCTTTGTTCCTCTGCAACCGGAGATGTCGCCCTGATAGCTACATCTGTAGCAAAAAGTTACCTATTCCCACTTATCTTTATAAAACAAGTAGTGAGAAATAAAGGAATCAGAACTCTTTCTTAAGCATATAGAATCTTTGGCCGGGCGTGGTGGCTCACGCCTATAATCCTAGCACTTTGGGAGGCTGAGGTGGGTGGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGACCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGCTCGCGCCTGTAATCTCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGTGGAGGTTGCAGTGAGCCAAGATTGTGCCATTGCACTCCAGCCTGGGCAACAACAGTGAAACTCTGTCTCAAAAAAAAAAAAAAAAAGAATATAAGATCTTTTTCACCATATTGAAACTTCCTGTGTGATATCAGTGTGATCACTGAAACATTTAGTAGCCCTGTTTTTTACTTGGATGCATTACTGTTGTCCATCATGATAGATTTTTAACTTAAAGTGATGGACCTAATCGTTTATATCAACCGGCTCTACATTCTGGCTTCATTCTGCTTTTAG
Seq C2 exon
ACATCAATGAATGCAAAGCATTTCCTGGGATGTGCACTTATGGGAAGTGCAGAAATACAATCGGAAGCTTCAAATGCCGTTGCAATAGTGGCTTTGCTCTAGACATGGAGGAAAGAAACTGCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138829-FBN2:NM_001999:24
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=WD(100=54.5),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCATGGAGCAGTGTTACTT
R:
CCGTGCAGTTTCTTTCCTCCA
Band lengths:
350-1196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)