DreINT0010660 @ danRer10
Intron Retention
Gene
ENSDARG00000098237 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr22:4109068-4109399:-
Coord C1 exon
chr22:4109271-4109399
Coord A exon
chr22:4109194-4109270
Coord C2 exon
chr22:4109068-4109193
Length
77 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TGTGCTTGTGTGTGTTTTAGACA
3' ss Score
10.64
Exon sequences
Seq C1 exon
ATATCGACGAATGTACGATCTCTCCGGACCTGTGTGGTCATGGTGTGTGTGTGAACACACCAGGCAGCTTCGAGTGCGAGTGTTTCGACGGCTACGAGAGCGGCTTTATGATGATGAAAAACTGCATGG
Seq A exon
GTGAGTGTCAGAGCAGTGGTGTTTTATCTGAGATTGTGCTGGTGGCCTCTTCATGTGTGTGCTTGTGTGTGTTTTAG
Seq C2 exon
ACATTGACGAGTGCGAGCGTGACCCACTGCTGTGCCGTGGAGGGACGTGTCTGAACACTGAGGGCAGCTACGAGTGCGACTGTCCTCCAGGACACCAGCTCAGTACTGAGGCCTCTGCTTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098237:ENSDART00000167748:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTTCGACGGCTACGAGAG
R:
CTTCACAAGCAGAGGCCTCAG
Band lengths:
176-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]