RnoINT0059613 @ rn6
Intron Retention
Gene
ENSRNOG00000043219 | Fbn2
Description
fibrillin 2 [Source:RGD Symbol;Acc:620910]
Coordinates
chr18:53131969-53133029:-
Coord C1 exon
chr18:53132901-53133029
Coord A exon
chr18:53132095-53132900
Coord C2 exon
chr18:53131969-53132094
Length
806 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
3' ss Seq
CTCACGTTTTTACCTTTCAGACA
3' ss Score
9.36
Exon sequences
Seq C1 exon
ACATTGATGAGTGCAGGATCTCCCCTGACCTCTGTGGCAGTGGCATCTGTGTCAACACGCCAGGCAGCTTTGACTGCGAGTGCTTTGAGGGCTACGAGAGCGGCTTCATGATGATGAAGAATTGCATGG
Seq A exon
GTAAGCATGGCCAGACCCTCCTGGCTGGCCTGGAACCTGACAACTGTATATACTCGTCTGCTGTGCCTCTGCTGGCTTCAAGGCTATGGCAGCACCCTCGACAGGGCGTGTGCCGAGAACGAAGGGCTACAGAATCCCTTCCCCAGGCTGGAAGCAGCACACAGACTACCCAGGATGCATTTATTTAAAACAATTAGCCTTGTGCTGGCCCTAAGTTTGTATTCTGCCTTGCCAGTTCCATGAGAGCTGTGTCTTAGAGTTGTGATACTGAAAAATGTTTGGGTCACTATTTCACGTGAGTGACTTATGGCACTTAAGATGCTGCCACTGTAGGGGGTCCAGCCTTTTCACTTTGCAACAGGGGATTGTCCCTACAGTGAGCTGGGCTGGACTTATAACTGTCTTGGGCTGCATGTAGCCAAGGGCCAGAGGTTGGACATTCCAATTGTAAACATTCGGGAGTTTTAAGAAAATTTTTTGTAGTTGGGTTCAAGCCATAAACACTAAAATAACTGACAACAGTGTATGAACCCAGGTCTATGGTGATATAAGGGAAGAGTTATATTGATCACCTCTTGTGAGCTATCATCTTGTACATGAAAATTTTTCAGTGGTTTACTGCAGTGACAGTAAAAGTTACTTAATTTTTACATTGAAGCAAAAGATAAAGCTTTTCCCATTTCTGATTGGGTGTGTCTTTACGTTTACGGCACACACCTGACTTCTAGGGGCCCTTCTCCCGTACTATATGTGTGAACGTGTTTTCCTCAGGGTGCTTTAATGAATCTCACGTTTTTACCTTTCAG
Seq C2 exon
ACATTGACGAATGTGAACGTAACCCTCTCCTTTGTAGGGGTGGCACCTGTGTGAACACTGAGGGAAGCTTTCAGTGTGACTGCCCACTGGGACACGAGCTGTCGCCGTCACGCGAGGACTGCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043219:ENSRNOT00000066548:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGATGAGTGCAGGATCTCCC
R:
CTATGCAGTCCTCGCGTGAC
Band lengths:
254-1060
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]