DreINT0011639 @ danRer10
Intron Retention
Gene
ENSDARG00000086896 | FUBP3
Description
far upstream element (FUSE) binding protein 3 [Source:HGNC Symbol;Acc:HGNC:4005]
Coordinates
chr5:853581-857015:+
Coord C1 exon
chr5:853581-853704
Coord A exon
chr5:853705-856978
Coord C2 exon
chr5:856979-857015
Length
3274 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
ATAAGTTTTGTTTCCTGCAGTGG
3' ss Score
7.14
Exon sequences
Seq C1 exon
TCTCTCTGCTGTTTGCAGATTAAGATGGGTGGCGAGCCGCTGCCGCACATGAATAACTCGTCTCCAGTGGTCGATGCTTCGCTGTACGGATACGCTACACAGAAACGCTCGCTGGATGAAGGAG
Seq A exon
GTGAGATGCTAAACATCATTAATACTTCACTTTATACACGCTTTCAATACTGGTGGCAATAAAAGACTCATTTAATAGAGGTTTTGATTCAATCTTGCTGCAAAACATGAAATAATTTGTGGCAATATTTTTATTGATCGGAAATATTAATAAAAATAAAAGATACAGACAACTTTAGACTCAACTAAAATATAAGTGATTAAAGCGATGCATTTAATGCTCATGAGCGTAAACTAAGATGCTGAAATGAATAACAAAAATGAAAAAAATAGACAAATGAAATAGTTCATCATGCAAAATAGCCCAAGAAACTGACGTACAATAAATAAATAAATAAACAAATTATCACCATGAATACAGCTTAAGATGCTGACATGGCATACAAATTATAACAATAAAAAATAAATAGTTTTTTTTTGCCATGAAAATAGCATAAAAAAATTATGTAAAAAAATACAAACAATTTTTTTAAATTAGTCATGCTAACATTTGCAATAAATAAATACAAATAAAAATAAATAAAAAAAAAATACATTTTCTTTATACAAAAATAGCCTGATGTAAAGATGCTCACATGGCATTAAAAATAACTAGTGTACTATAAAAAAGTAAAAAATACATAATTTGTTTGCCATGAAAATACACTCACCGGCCACTTTATTAGGTACACCTCACTAGTACCGGGTTGGACCCCATTTGCCTTCAGTTCTGCTTTAATCCTTGGTGTTGTAGTTTCATCAAGCTACTGGAAATATTCCTCAGAGATTTTGCTCCATATTGTCATGATAGCATCACACAGTTGCTGCAGATTTGTCGGCTGCACATCCATGATGCCAATCTCCCGTTCCACCACATCCCAAAGCTGCTCTATTGGATTGAGCTCTGGTGACTGTGGAGGCCTTTTGAGTACAGTGAACTCATCGTCATGTTCAAGAAACCAGTCTGAGATGATTGAGCTTTATGACATGCTGCGTTATCCTGCTGGAAGTAGCCATCAGAAGATGGAGACACTGTGCTCATAAAGGGATGGACATGGTCAGCAGCAATACTCAGGTAGGCTGTGGCGTTGATGCTCAATTGGTACTAATGGACCCAAAGAAAATCTCCCCCACACCATTACACCACCACCACCAGCCTGAACCGCTGATACAAGGCAGGATGATCCATGCTTTCATGTTGTTGAGGCCAAATTCTGACCCGAGCATCTGAATGTGTCAGCAGAAATGGAGACTCATCAGAGCAGCAACGTTTCTCCAATCTTCTATTGTCCAGTTTTGGTGAGTCTGTGTGAATTGTAGCCTCAGTTTCCTGTTCTTAGCTGACAGGAGCGGCACCCGGTGTGCTCTTCTGCTGCTGTAGCCCATCCGCCTCAAGGTTGGCCGTGTTGTGTGTTCAGAGATGCTCTTCTGCAGAGCTCGGTTGTAACGAGTGCTTATTTGAGTTACTGTTGCCTTTCTATCAGCTGGAACCAGTCTGGCCATTCTCCTCTGACCTCTGACCTCATCAACAAGGCATTTGCACACACAGAACTGCCGCTCACTGGATATTTCCTCTTTGTCGGAGCATTCTCTGTAAACCCTAGAGATGGTTGTGCGTGAAAATCCCAGTAGATCAGCAGTTTCTGAAATACTCAGAGCAGCCCGTCTGGCAGCAACAACCATGCCACGATCAAAGTCTCTTAAATCCCCTTTTTTCCCCATTCTGATGCTCGCTTTGAACTGCAGCAGATCGTCTTGACCATGTCTACATGCCTAAATGCAGTGAGCTGCTGCCATCTGATTGGCTGATTAGAAACTCGCATTAACGAGCAGTTGGAAAGGTGTACCTAATAAAGTGGCCAGTGAGTGTACATGCATGTGCACACATACATACAATTTCTTACCATAAAAATACCCTAAGATGCTGACATGGCATTTAAAAAAATATGTATAAAAAATGAAAGTAGCCTGTGCTCAAGTGGCATGAATAAATAACAAACATACTCAAATTCTCACTGTTTAAATAGCTGAAGACACTCACTTAGCTTTAAAAATAATACTACCACTAGTGATAAAGTTTATTTATCAAGTATATTTGCCTTGCCCTATATACTGACATGAAATTTACAATAAATAAAAATAAATAATGTTGCATCATGAAAATGATCCCAGAAGCTGGTCCTATATTAAACTATCAAGCATGAGTGCAAGTAAAACAGCAGCAGAATATTCCTCCATGCAGGACTTGATGTTTGTGCATTGACTGGAGTTTCTGCTCTTCTGCTGCTTGCGAAACTTCATGAAACAGTCAGAAAAAGCAGCGCTAGAGTCGAGCTTCAGGAAGTGAAAGCTGTGTGTGTGTGGTCAGAGCTCAAACACACTCGAGCTGCACTTCAACAATCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGCATGATATTGTGTAATGAATTTCCTCCAGTATAATTAAGACATATATTCATTAGGCATTGCTTTCTTGATTTGTGGTGGCGTTGGGCAGGAATGTGTGTTTATTTTAATGTCCTAAAACCTTCAAAAATGTACTCCTGAAACTAGGTTTCCTTTAAGACTATTTATATTTTTTTTCTTTAATTTTTATCGCAAGAATGGGTCACTTTTGTTTTAGATTTGCTCATTTTAATTAAGAAACTATAATAATAATACTTTATCAAAATAATTGTTAATATTATTATTATTATTATTATTATGTAAAACCACAGAGCCGAGGTTTAAAATATGTTTTTTCATATTTATTCAGTAACCTGCATCATTTTAAAGAAGTCAAATTGTAATTTTTCAAAGTGCAAAATAAGTTTAAGTTTCTATCAGAAAGTGTGTGTGAAAATCCAAACACCATGCTTTATTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTATATAATAAAAGCTCCTTTTTAGGGTGAACACAAAAGAATGTGCTATTTTTTTTGTGTTTCTATTTTGTGTGTTTCTTTAAATGCAAATGAGATTCAGCTCCCCGCCCCCCTTTCCAGAAGTGGGCGGAGCCATTACAGCATGTGCTTCAGATTCTCTGACAACAACAGACAGTGCTTTAAAACACTTTAAACCTCCTTATATGTGGATTTCATTTTAGTTTTTTATAATACAGGTTATGAATGTTTGTTTCATCAGCCAGACTGTCAAATTATTTTTTGTATTTTTGACAGTAATATTAATATATAAGTTTTGTTTCCTGCAG
Seq C2 exon
TGGCAAACCAGCTTGGTGCAATGGTACATGGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086896:ENSDART00000166336:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.378 A=NA C2=0.154
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]