DreINT0013154 @ danRer10
Intron Retention
Gene
ENSDARG00000062687 | KCNH7
Description
potassium channel, voltage gated eag related subfamily H, member 7 [Source:HGNC Symbol;Acc:HGNC:18863]
Coordinates
chr6:10334959-10335437:+
Coord C1 exon
chr6:10334959-10335103
Coord A exon
chr6:10335104-10335289
Coord C2 exon
chr6:10335290-10335437
Length
186 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GTTAATCTGTGTGTGTTTAGGCT
3' ss Score
7.56
Exon sequences
Seq C1 exon
ATGTGTGTGTTGAAGAATGGCCTTGTGGGAATGCAGATGACTCAGCGAAATCTCAGGACAGAGAAGGAGGAGACGACTGCGAAAGCGACATCACGTTCGGCGAAATGGAGCAACGACTGGATCTACTGCAGGAAAACCTGAACAG
Seq A exon
GTGAGAAATAGAAACGGAGGTGAAGTAGGTCACCCGCTAGACTAAATTAAGAGAGTAGAAGTTAAAACATCAACTTATCTGAACATCTTGTACAGGTGGTAAAATGGTGCCTTACTGCCCTCTGCTGGCCGTAGACTGTATTGAACACTTCTTTTAATGCCTGTGTGTTAATCTGTGTGTGTTTAG
Seq C2 exon
GCTGGAAGCGCAGATGACTTCAGACATCCAGGCGGTTTTGCAGCTGCTCCAGAGGCAGAGCGCTCTGGGTCCTCCAGCGTACAGCACTGTAGCCGTCAGCCCAGAGTACCAGAAGCCCATACAGCCCGTCACTGCCATACAGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062687:ENSDART00000151288:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.816 A=NA C2=0.660
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTGTGGGAATGCAGATGA
R:
ATGGGCTTCTGGTACTCTGGG
Band lengths:
246-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]