MmuINT0085531 @ mm9
Intron Retention
Gene
ENSMUSG00000059742 | Kcnh7
Description
potassium voltage-gated channel, subfamily H (eag-related), member 7 [Source:MGI Symbol;Acc:MGI:2159566]
Coordinates
chr2:62543973-62554333:-
Coord C1 exon
chr2:62554165-62554333
Coord A exon
chr2:62544166-62554164
Coord C2 exon
chr2:62543973-62544165
Length
9999 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
CCCTTTTCTATATGTTGCAGACT
3' ss Score
9.89
Exon sequences
Seq C1 exon
ATATCACTGATACACACAGCTGGGAAAGAGAGCCTGCCCGGGCTCAACCTGAAGAATGTAGTCCCTCAGGACTTCAGAGAGCTGCCTGGGGCGTCTCTGAGACGGAAAGCGACCTCACCTATGGGGAAGTGGAGCAAAGATTAGATTTACTTCAAGAGCAACTTAACAG
Seq A exon
GTAAATCAGTGGTCAAAGAAAAAGAGGAATTTATGTGTACTTAAAAGAATATCAAGGAAGACTAAATTCAGGATACTTTTGCCATCAAGCAACCTATGTTTGCTTACCATTCCATTTGTATGTCATCTGAACTGGTTACCTTAAAAGCTCCTTCATGCCCTCAAAATAATTTACATTTCACTTTTTAACTGACAACTGCCTCCTTTTAGTCCCTGTATACTATTCACTTTTTTTTCCTGAGTCAATCCTCTGCTGTGACATAAAAATGACTGATTTCTCATCAACTATTCAAAAATGTTAATATTTTTAAAACTTCACAAGTAAAATGCAAGACTTGCTTTTTCTCTTTTCTTTTATCTTGACAATATAATAAGAGGAACAGTTTTGGTCTGGGGAAAGATACATACAATCAACATTATATGGGTTCAACATATAATCCTAGGTTGTGGGCATGCCATATCCAGACCATTCTATAAGCAAATCATATATCTTATATGGACAAAATTCACATATTTTGAGTATAGATGAGTAGTTTGGAGACAGTATAGACACACACACACACAGTATTTAGGTAATAGCACTGTCTATGAAAGTTTGAATGGAAATGTGATGTAACAAGGAAGGTGGGCAGTTATGAAAGACATCTCTTTCATAAGACCTTACTCTCCTAGCAGCCCTGGGCCGATAATGTATCCCCAAGTTAAGCCAACTTCTAATTACACTCGATGTATTCTAATTGCAGCGCCTCATATGCTTTGTCTATAAAAGCCTGGCGAATCCTGTGACTGTTGAGGCTAACTGGAGAGCCATGGCTATAGCATGGTATTCTAAGCCAGCAGATGCCACTCATATGTAAGTTGAGTTTTTGTCTATAGGTCTTCTGGTTCTTGTGTCCACACTACTGACAGAGAAGAATGGTGTATGAGGAGAATGGGGAAGAGAGGAGAAAATTGTCTAACAAGGGTTCAGGTAGCATGCCTTTTGATCAACTTGCAGAAAATGTATTTAAGATACCTTACTTTATGGTATAACTGAAAGTCAACACTGCATAAAACAAATTTCCAAACGCACTCAGGGCAGCCATCAGGTTTTATATTTTCTAACAGGTTTTTTTGAGGCACAGTCTCCCTACATAACCTTGGCTTGTCTGTGCTCTGTAGTACAATCGGGCTCAGATCTCAGAGATTTGCTTGTCTCTTCTAGATGTTTTTGACTAATTTAACTTTAAAGAGCCAATACAGGCTTGAATTAAGTGTTGTTTCTTTCCCCAGACCAAAACTATCAGTAGTGTGGACACAAGAACCAGAAGACCTATAGACAAAAACTCAACTTACATATGAGTGGCATCTGCTGGCCTAGAATACCATGCTATAGCTATGGCTCTCCAGTTAGCCTCAACAGTCACAGGATTCGCCAGGCTTTTATAGACAAAGCATATGAGGCGCTGCAATTAGAATACATCGAGTGTAATTAGAAGTTGGCTTAACTTGGGGCTGAATTATTGGCCCATGGCTGCCCAGGAGAGTAAGGCCATCTCTTTCATAACTGCTCATCTTCCTTATTACATCACATTGCCATTCAAGCTTTCATACACAGCGCTATTACCTAAATACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTATACTGTCTCCAAATTACTCATCTATATTCAAAATATCTAAATTTTGTCCATATAACATACATGATTTGCTTATAAAATGGTCTGGATATGGCATGCCCACCACCTAGGATTATATGTTGAACCTATATAATGTTGAATGTATGTATGACTCCCCAGCAAATGATCTTGTTTCAAAAACTATGACATTTGAGCTGGAGGGAGGAGATCACTGCAGGCAGCTATGAAATGTATAGACCAACACACTTCCTGACCTTTCTCTGCCTCCTGGTCTACCCAGCTGTAAGAAAGCAGCTTCATGCCCCTGCTTCACAGCTGAGAGCCATTCTTACTGCAATGCCTTCTGGGGTGGTATGGATAGGAATGGACCACATAGGCTCATGTGTTTGAATACCTGGCCCATGGGGAGTAGTACCATTAGGACGTGTGGCCTTGTTGGAGTAGGTGTGACCTTGTTGGAGGAAGTGTGTCACTGTGGGGGTGGGCTTTGAGGTCTTAAATGCTCAAGCTACACTCTGTGTAGCACAGAGTCTGCTACTCTGCCTGTGGATCAAGGCAATTCCTTCTCCAGTGCCATGTCTGCCTGCAGGCTACCACATTTTCTGCATGATCATAATGGACTAACCCTCTGAACTGTAAGCCAGCTCCTATTAAATATTTTCCTTTATAAGAATTTCTGTGGTCATAGTGTCTCATCACAGCAATAAAATCCCAACTATGACATCTTCCTTTCCACGATAGACTGTACCCTCAAACTCTGAGCTGTCGCGCCTGCTCTCGACCAGCAAGAACGATGCGACCACCAGTCCTTCTAACAGCAGTTTATTCAGTCCTCATCTTTCTTCTTTCTCTTCATCAGTACCGTTCCCCAGCTGAAGAGTTCTGAATCCACGCCGGATCCTTCTCAACAGTCTGTTTCACGGGAACCTTTATTAACCCCTTCTTCCCCGTTATGCAGTTCTGAATCCTCCCTGTAGCAGGGGGTCTTCGCTCGTGACTGAAGATGTTTCTTTTCCCGGGTTTCAGCACCAACTCTTGCGCGCGCTCAACTGGCCAGGAAGAACGACGCTGCTACAGGATCCTTCTGCACACGTTTATTCAGTCCTGTTTCTTCTTTCTCCATATATCTCCCTTGTTTATATCTCCCTTGTTTTTATATCGCCCCCGAACCCTGGGCCTCTCCTTTTATACACTCTCTCATCCACGCACCGCAGGCCACGCCACCTCACCAGGCACGCAGCTTCAGCTAATCAGGGCAGCAGGGGCAAATCTCCACCAAATTGGATTCACCTGTATCCTGGTACACCTGCGCAGCACTCAAGATGTTTGTGTCTTATATGAGGAAGTCAGATGCAAGTCATATGACTTAGCTGCAGTCCCTGGCGCCTTTGGGACTGCTGCCACACCCGCTCCCCACACTGAGCCCTATAAACCTCCAGTTCTTCAAGGTGCTTTTTGTCAAATATTAGATCATAGCCATGAGAAAGTAGTTAATATAATTTACTTATTTTCTGCACTTAATTCTTCTTGTTCAGATTATGCTGGTAATGGCAATAGATGTTGCTCTTCTTGGGAAAGAGAGAAAGTAAATGATGGAGACAGCAGTGATTTGATTAGCAAAATACCAACACAGTATACAGAATTTGTTAGCTTAGGTCAGTGATCCTTAACCTGTGGCTCGCAACCCCATAGAGGCAACATATCAGATATCCTGCATGTCATATATTTACATTATATTTTATAATAGCAAAATTACAGTTATAAAGAACAACAAAACAATTTTATGGTTGAGGATCACTACAACATGAGACACTGTATTAAAGGGTTACACCATCAGAAATGTTGAGAATCACTGGTAAATCTTAACTGTGCTCACTAAACTATTTATAGGCTAACTGGATGAAGTCATTTAAACATTCCTAGAATCATGTTTTTCATACCTATCAACCACATTGTTTTTCTTTTACAGTCATATCCTAATATCCACAAAAGATCGGTTCCAGGATATCACTTAGGAACCAAAACCTATGTATGCTCAACTTTTTATATAAAATAACACCATTTGCATGTAACTTACACAGAATCCTCCTGCATAATTTAAATCAGGTCTACATTACCGTAAGTCATAATAAAATGTAATTGCTATGTCTGGAATTGTTACTCTGCATTGCTTAATGAATAGTAACAAGAAAACATTTCTACACAACTAGTACATGTACAAATTCTTCAAGATTCACAACTTCAAAGTAAAGTCCATTTGAACATAGAGACCACACATGCTGTATAAAAATAGAATGTATGTGTGCAGTTAGATCATGCTTAATCATTTTTCTTTATCTGTTACTGGCATTCTCCTGCTTCACATAAATGCCTAGGTTTGCACCAGTCTTTATGACGAAAAACAAAATTATTGTGTCCTGTTTTTGCTGTCTAGACATTGATACCAAAAATGTTTATAAGATGTATAAAATTGTTTTTCAAAAATTTGTTTTCTATGTGTCCTAGAACTGAAAGTAGAAACCTTTAAATATATATGACAAGAACACATCTGATTTTAACCACCTATTAGTAATAATAGTGATTGTTTTCTTATATTAGCATATGCTACATATTTTTCCTCGGATAAAAACAGGACTAAATATCTTTTGACATGCTCCCAGCATCTGCAAGTGCTTTCTAAGCATGTTTTGGCTTGTTATCACAATTAGCAGTTCTTCTTGACTAATTTTTCAATTATCTCTGGTATCTTCACCAATGTTTTATATCATAACATTGCTTAGCCAATTTTAAAGTTCAAAACATGATGTTTTTATTCAACTCCACCTTCAACAGCTTCTCTTTTCCAATTTGTTCTACAAAGTAAAACATATAGGAAAGAAAACTTAAAATCCTAGTATAGACTTTACTCTCTTCTGAGAGTACAGTCTACCCTGGTTGACATTTATTTAAATCCCGATCTGTGAATTCTTATATTGTTGTCCATTTCAAATATAAATATAAAATCTAATCAAAGCAAATACAACTAAGATACCTTTTTCCAGCACTAATGGCCAATTAAGCTGCATGTGAGCTTAAAGGTTTATATTAGTGTGCTTATTTATTTATATGGTGTGCCCAGATATATACATAGTTGGAGAAATTATAAAGGCTTGATCCCACAACAGAGCTCCTTAAGCTTTGACATGCACTCATTTCACTGGGTAAGTTGTAGAAGTGCAAATTATAAGACAAAAGGTCTGGAGTTTGCAGAGTCCACACTTAGGCTGCCAGCAATATTTAATGCTGCTAGACTGAGGACCACAGATAAGATGGCCCAAGAGATGTAAAAGTTGTTGTCAATGGCCTTTCTATTGCCGAACACACAAAGCAATGTGTCTGCCTGCGACTGTCGTGACATTGAATGCTGATGCATTCACAGTTACAATTTATTATCCGTGTCCTTCAGTTTCTTATTTTAGTGTTTGTGTGGTGTGCACATGTGTACATATTCAGGTTATGCTTATGTATATATGTGTGCATTTGTAGAGGTCAAAGTTGACACTGGATGTCCATCTTGATTATTTTCTAACATGTATTCACTGAAGTGTCTCAGCTGAACTCGGAGCTTGTCAGTTGGCTACCATAGCAATCCAGATTTCTCTCATGATTTCCCTTCTCTGCCACCTGAATGCTGGAATTAAAGATGGTAGTCATATCTGCCCAGCTTTTTATGTGGGTTCTGGGAATCCAAACTATGATCCTATACATGTCCTGCCAAAAATGAGATCACATTCAATTATTATTCATCATGGTGTTTTCATCTCTCCTTCCTACCTTATGTCATGTCTGATTGATAACAGATCTTTGAGTAAAACTATTCTTTTTCCACAAGTTTATTAATCAGGAAAAACCCATAAAACTGGGTTATTTTGTATTTTAAAAATAAAGGAAAAGTGGAACTTCTGTTTACCTCCCTGTAATTCTTTCTAAGTACTTTAGTCTTAAAAGACTCTATTCTATCTCAGCAAATAGACCTGACCATAGCATGAAGCTAAATATTATTCATTGTAAAGACTCTTAATACCATACCCTCTTTTGCTGATATGCCCTACCCAAATATCAATCACCTAATTAATTTTTTAAAATCTTGAAAAATTTAAATATGTATGTATATATATATATATATATATATATATATATATATATATATACACATACATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTATGTGTATACTGTACTTAGGAATTTAGGAACATATGTATATGCATAATATAATATACATATCTGTGTGTAACAACTATTAATGTAAAAAGAGATCATGAATTTGAAAGTAAGAAGGGGTATATGGGAAAGTTTGGAGGGAGGAGGAAGGGCAAAGCAAAATGATGTAATTATATTATAATCACAAAAAATAAAAGAAATAATTTTGAAAAGTGTTAAAAATAATATATGAAAGGAGACTGTGATAGTCAACTGCATCAAGGTTCAGTGTTCACAGGACACTGTGGTCAAGTTAGGGAACTGGTCTGATTTTTCCAGCCTGTGACAAGTAGTGCTAGAAGAGCAGTTTCAAAGGAGGGAATTTTTGCATTGGTTTCCAGTTTCAGATGTTATCTTCTGTGGTTTGGTGCACTCTGGTGAGGGAAAATATGATGTCAGGAAAGCATGGTAGGCACAGTTGCATGTCTGAAGGCATCCATGGAACACAGAGAATACCAGAAAGGTGCCTGAGACACCATAGAGTACCCAAGGATACACTCTCCAGGATGCACTTCCTCGAACTTGGCATCAGCTATGAAGGTTTTCATTGCTTCCAAGTAGGCCCATCAAATCACAAACCTACCAATGGATTAACATAGTGGTTAAGTCACTCTTCAATGACTGAATTGACCTGCAAAGAATTGATCCTTTAACACTGAAGCCTTCTGGAGATACAATTTATATCTAAACCATCAAAGAAAACAAATGTGGTAAATTCCTGACATACTATGTTGGAACTGAAGAGCAAAGAGAGGTGAGACTGCTATAGAAGGACTTGAAAGTGTTTGATTAGAAACCTGTTCAGATGAGCTGATTTGTAGATATTTCTGTGCCCATAAACCTAGCTCTTAGTCTTATTTTTCTTAGGCAAAATTTCCTTGCAACAAATAGCTAAGCCAAGCTGATAGAGACGATCCATACTCTAATCTAAGTAGAATTAACATAAATGGTCTCCAGGTTCACTCTGCATCAGCCATTTTTCCTGACAATGATGGTCTCGCATGAGTGAGTCCCTGTCACAGTAGCAGACCACAGTTATCAGGCATATGGCTGCTGAAGACCTACCTGCCTGTGAATGTGTCTGCCATAGACATTTTAAAAATAGAATCTATTAAAAGGATATCTTTTTTTCTCTCAGAGACTGCTGTTGTTTAACAAAAGCTTTTCAGGACTCAGAAATATCATCATCTTGGATCCAACTTGTCAATGAAGCATTTATTCCAGAATCCACAGCTAAGTCATTTTGCATTCACGGTGTATCTTGGCAACAGTAGCAAAGAACATGCTGTAATCCATCCACTATTTAGATGTTGCCATTGACAGGATAAATTTGTACAAATGCTATGAAGATGTTTGAATTTACTATTTCAGGACTAGGGGGGAAGAGAAATAGTTTAGGGGTTGCTCACCGAAGACAAGCATTCAAACACAGTGCATAGCCAATTGAAAGACTTTATTCTAGCCTGCTGGGACCACACCCAAGTATTTGGGCGACCTAGGTGTGACTCCCTAGTCAGGTGTCTTGCTCAGCAGCCACACGGAGCTTTGCAAAAACAAGCAGTTTAATAGAAGCAAGACAAGTTAGCTAGTATATTCTGACCTTTCGTTCCTAGAGTTGGGTAGATTTCCATGGAATTTTCCATCAAAGAGATCAAATTCTAGTTTAAACGGAAATGACCTCAGCAAGAATACTATATGGAAGAACCTTTGCCCTGCCTTGTCCCATCACAAAATGGTTCTGAATGAGTTAAAAGAAAGAATTTTTGGTGTAGATAATTCTGCAATTACTTAGGACATTTTGGCATCAACCAGCTGATATCTGCAATTTTTCCATCTTCAGTGTGCAGCAGTGACATTTATATGACACAACCAGATATTTTTATTTTACAGCCCTATATTAATTTAGCACCAGGTAACAAATATACATCATTTACATAATTATTATATAATTTACATGCATAGTTACAAAAATATCTCTTATACAGTAAACACCTGAAGAATAAAGTGTTTTTCTGCAAGTAGAAAACTCATTTTTTTAAATTGGATATTTTAGTTATTTACATTTCAAGTGTTTCCTTCTTTCCATTAGTATGAGGAATACCAGTGCACTCTCCAGTTATATTTATCAATGAAAGAAAATCTATAGGAATGTACTATAATTGGAAAAGAACAATTCTTATTGTTAATGTTAATATTAAAAGGCAATAAGAACCTTGTGTCTGGCACACCTGTAAACCCATTAGTTCCAGACACTTGAAGAGAAGTAAGTATAGGCTAGACAGGCCTCCCTGCACAAAAAGATATTATCTCAAAAATTAAAGTGAAAAATCATATACAGCTTCTCTAATGTTTTCCAGATTTTTATTCTCTTTAAAATCAAAGCTAATTTCCACAAGTATGTGTATTTAATTAAGAGGATAGTTCTAAAATTTACTGTTCTCTCTCTCTCTCTCTCTCTCTCTTGATTTTGTGCTCAATCACAAGCACAAATAAGATAATTCAAAGAATTTTCTAAAATTGCACATAGTTCAAATTTTGTTCTTACACCCACAAGACCCCTTATCTTAAGCTGTCCACACAGGGGAATCAAGCTGTATGTGAAGGTTTCAGCACCAGATGCATGTGAGGGGGCTCAGGAAAGTAAATGCTGACATGAATGCTCTATGGTATCTTGTATTTTTTTTTTTTTTGAGACACAAAACAGTCAGAAGCATCTGGAAGAGTTCAGAGCAGATTATTGGATGGGGGGGGGGGTGGGGAAGAACAGGAGACATTACATGGAAAGCATGTTGAGAATACTAGAAGAGCAGAGAATATAGGAGCAAAGTGAGAATACCAGGAGGCTGAAGAAGGAAACACTGTTGGGTTAGAGGCAGGATGAGTATCTGGAGGGAGGGATGCCCAGGAGCTGGAGGGAGTTTAGGGTAGAGATGGAGCTGAGATAGGCCAGAAGGCTAGCAGGCACTTTGAGATATACACCAAGTAAGAAGAGACTGAGGGAACCTGGAGACCACCTTGGTAAGTTGGTAAGTGCCAGAGGTATCTGTTAATGATCTCTATGTCCCTTTTGATGGAGGCAAGCGAAATGAGTCCTTCTGGCCAGTGGGAACTGGTTTCACAAGTTCCAGAAGAGTGCAGACTTTTCTCTAACTGCCAGAAACCCCCTATGTCCAGTTTGAGCTCATTTCTGGATTACTTGGACAGCCTTGGAGTTGGGAGGCTTGGAGTTCCCTTTGGACCTGGCACAAACCAGGCATTTTGTCATTTTCTCTAGAATTTTATTTAAAAGTACCATGACCAAAGCAATCTGAGGAGGAAAGGGTTCATTAGACCTAAACTTCCATATCAGTAGTCATCAAAGGAAGTCAGGGCAGGAACTCACACAGGGCAGGAACCTGGAGGGAGGAGCTGATACAGAGGCCATGGAGGGGTGCTGCTTACTGCCTTGCTCCTGGTGGCTTGCTCCATTTGTTTAGTCATAGAACCCAGAACCACCAGCCAAGAGATGACACCACCCACAATGGACTGGGCCCTCCCACACTGATCACTAATTAAGAAAATACCCTACAGCCAGTCATATGGAGGTGTCTTCTCAATTGCAGTCCCTATCTTTCACATTAGCTCTAGTTTGTGTGTAAAGATGACACAAGACTAGCCAGCACATAGTGAAAATACGAAGTTTTGCAAGATGTTTTCCTGAGATGTTGCAATCGTAAAGAAACATGTTACCAAATTCGTCTTTGAATGAGGGGGAAATCAAATGATTGCTGATCACAATATTCCAAATGTGCTTTATATGTTAAAATCAATAAAGTTTTGTAAAGATAAAGCTTATTGTATGAACTCTCTTTTTTCTGTTAGTATACCCATAAGAAATCAATGATCTGTATCAGAGTAATTAATTCTATGGAAAGGGTCAAGTGGGAGAGAGTCTCTGTCCTTCCCCGCTCTCCTGTTTAGAGCAGCTCCTTGTCATTCTATTTGTTGGCACTGCTGATACGGTCTCAGATGTTTTTGCAGGTTAGGACTATTTAAAACTATCTCTCCCTTTTCTATATGTTGCAG
Seq C2 exon
ACTTGAATCCCAAATGACAACGGACATCCAGGCCATCTTGCAGCTCCTGCAGAAACAAACCACGGTAGTCCCTCCAGCCTACAGCATGGTGACTGCAGGAGCAGAGTACCAGAGGCCCATCCTCCGTCTGTTGAGAACCAGTCACCCCAGAGCATCCATTAAGACTGACCGGAGTTTCAGCCCCTCCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059742-Kcnh7:NM_133207:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.684 A=NA C2=0.338
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: