DreINT0014882 @ danRer10
Intron Retention
Gene
ENSDARG00000104499 | MUC5B (2 of 3)
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7516]
Coordinates
chr25:8169788-8170081:+
Coord C1 exon
chr25:8169788-8169857
Coord A exon
chr25:8169858-8169950
Coord C2 exon
chr25:8169951-8170081
Length
93 bp
Sequences
Splice sites
5' ss Seq
ATCGTAATA
5' ss Score
-1.66
3' ss Seq
CAAATCTGTTTTTTAACTAGGTA
3' ss Score
8.6
Exon sequences
Seq C1 exon
ATTTCAAGTGTCCTAGTACCAAAGTCTACAAGGCATGTGGACCGAAAGTGGAAAAATCCTGCAGTACATC
Seq A exon
GTAATACGCCTCATTAAAATCCAAAACAATTTAAATATGTGCAATATTTTTAGCACTATGTCTTCGTCACTGACAAATCTGTTTTTTAACTAG
Seq C2 exon
GTACAATACTATGTATGCGGATACACAATGTCAAAGCAACGATTGTAACCAAACATTAGCAGAAGGTTGCTACTGTCCTGATGGCCAATATCGGGTTAATTTGGCATCAAATTTGTGTACAGCTTACTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104499:ENSDART00000164115:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGGCATGTGGACCGAAAG
R:
AGCTGTACACAAATTTGATGCCA
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]