HsaINT0106755 @ hg19
Intron Retention
Gene
ENSG00000198788 | MUC2
Description
mucin 2, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:7512]
Coordinates
chr11:1099211-1099519:+
Coord C1 exon
chr11:1099211-1099280
Coord A exon
chr11:1099281-1099418
Coord C2 exon
chr11:1099419-1099519
Length
138 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
CAATGCCCTCCCGCCCCCAGCTC
3' ss Score
8.04
Exon sequences
Seq C1 exon
TGGTGGAGTGCCCATCTCACAGGGAGTACCAGGCCTGTGGCCCTGCAGAAGAGCCCACGTGCAAATCCAG
Seq A exon
GTATGTTGTTTGAGGGTCCACCAGGACCGTGGGCTCGCCTTCTGCAGTGCGGAGGGTGGCATCATCTGGGCATAGCAGTCCCACCTGCCAGCTCCCCAGCCCCACCCCACCTGTCTGACAATGCCCTCCCGCCCCCAG
Seq C2 exon
CTCCTCCCAGCAGAACAACACAGTCCTGGTGGAAGGCTGCTTCTGTCCTGAGGGCACCATGAACTACGCTCCTGGCTTTGATGTCTGCGTGAAGACCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198788-MUC2:NM_002457:39
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PU(35.7=83.3)
A:
NA
C2:
PF0182612=TIL=FE(60.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCATCTCACAGGGAGTAC
R:
GCAGGTCTTCACGCAGACATC
Band lengths:
162-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)