DreINT0099059 @ danRer10
Intron Retention
Gene
ENSDARG00000070331 | muc5.1
Description
mucin 5.1, oligomeric mucus/gel-forming [Source:ZFIN;Acc:ZDB-GENE-120822-1]
Coordinates
chr25:8311792-8314817:+
Coord C1 exon
chr25:8311792-8311861
Coord A exon
chr25:8311862-8314686
Coord C2 exon
chr25:8314687-8314817
Length
2825 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATC
5' ss Score
6.99
3' ss Seq
ACTGCACTTCTCATGACTAGGTA
3' ss Score
6.77
Exon sequences
Seq C1 exon
CACACAAATGCCCCAGTCACAAAGTATACAATGCATGTGGACCTAAAGTGGAAAAAACCTGCAGTACCAG
Seq A exon
GTAATCTTGCTCTACAGTAGTCAACAAAACAACAGTCCTTAATAAATATCAGAGATGGCAAAAGTACAAACATTCTTTACTTAAATAAAAGTACAGATGCTCAAGTTTAAAACGACTCAATTAAAAGTACTGACTACACGTTTGTACTTAAGTAAAACTATAGAAGTACTGCCTGAAAAATGTACAAAAGTAATAAAACTAGAACCTAAAGTTTATTGAAAAACTTTGATGTTGGCTTGAGAAAGCCAACGTGACTGTGCTAGGACTTGGAATGGCAGTTGACAGGAAGCACTGTGGCGGTTGCTAAGTGGTTGCAATTATGCAATTATGGCATAACTAACCAGTTGCTAAATGGCAATGCTCGTGTGCATGTTTGATCAAATGCTAATACTTAGTAGGCATTTCAAGCATATGTTATTGCATTTAGATAATCATTCATAGCATGTAGTTAATTGTTTTTAGCACTTGGCTCCCATTATCATTGTTACCATGCATAGTACACAGGAAGTCCCATTTGCTAGCATGAGTCAAATAAGCCAATGCCCAGGTCCCTACGATGTTCTGATGTAGAGATATTGCCATTTTTAAATGGTTGCTAGGTTATACTGTTTTATTGCTATGGGGATATTTGACAGGTTAGTGATGATACATCAAAGCTTCTTGGCAATATGAGTGATCTTAATCAACCCCAATGTTTCTATGACAGTCTTTATGAGTGTCAAAAACTAGACTTGAACATTATGTATTCCTGGTGTTGGGTTGCGGCTGGAAGGGCATTCACTGTGTAAAACAAATGCTGGATAAGTTGGCGGTTCATTCCGTTGTGGCGACCCCTGATTTATAAAGGGACTAAGGGAATGAACATTATGTAAAAATGGCTTGCCGTATTTTTTTTTTAAATACAATGCTTAATAAGTGTAAAAGTAATACATGCAAAAATGGCTTGCCATATCAGTAAAAAATATGGAGTTTAAGTCAAAAATGGCTTGCCATATTTTGAGAAAAATAATGCTTAAAAATTATTTATTGGAAAACTATAAGTCTGTTAAACCTTAAAGATATAGCAACAAAATCTAACGCATCTAAATACAGCTTTTGGCCAAATTTGGGGCTTGTATAATTTTTTTATATGCTCGAATTATAAAAAATTAATCTTTAACATTTTTTATTCAAAAAACAATAAGTCTTATAGGCATGAGGAGATATAGCAACAATCTTGAATGTTGAAGGCACATTTTGACCACATTTGGACCTTGTGGCATGAACGAGATACGTTTGTTTTCAAGGACAGAGTAGTATAACAGTATGTTGGCTTTCTCAAGCCAACATAATAAAAAGTACCGGTTTCAACCACAGGTTAAAAACATGCGGTAGTGGTGAATACAAGGTAACTAAATTGGCAGTAGTGTATAAGTGTGTGTAAATGTGAGTGTATATGAGTGTTTCCCAGTACTGGGTTGCAGCTGGAAGGGTATCCGCTGTGTAAGACATATGCTGGAATAATTGGAGGTTCATTCTGCTGTGGCGACCCCTGATAAATCTGAAGGATAGTGAGTGAGGATAGGTAGGTAACTAGACCTCACATTCTATTGATACGTTATTATAAAATAACTGACATTTCCAATTTTTATGTAAAATGTTTGTTGCCAAATTTATGAAAGTAGCCAAGCAGCATCAAACTCTGCAATATAGCCCAACAACATTGTTTAAAAAGCACGGCCCATGTATCATCATCCAGACGCAAACTCACAGCGTTCAGCATGTAGTTTTTCAGCTGTTAGATCAAAAACATCAGCTGCCTTTCATGTTGATACACTCTAAAAATAGTTCTGTAGGCCTGTCTATCTTTATAATAATATAATGTCTTACATTTTGCACTGAATTCTGTCCAAAACATATTGAATTTTTTTCTTTTGCTAAAATAAATTCTAATGAAATTTGACTGTAAACTTTTTTTTTTTTTTTTTTTGCATTAGGCTAAAGCTGCTTTTTTCTTCAAAGAGCAGCTCTCATAAATAACCCAGAAATAAAAAAAATAAACAGCAATGCATACATTTTTATAAAGTTTTTGATTTTTTATTACTAAATGAACAAATCTATACAAAAAAGCACTATTTTTTACGGTATTAGATGTATAAGCCTGTGCAGTAATGATCGGAAGAGCACATAAGGCTTTAGCATTTAGCATGTTTTTGAACTGGAATGTGTGTCTCGTGTTTACCTGTGATCCGATCGAGCAAAAGGTGTATTAATACCGTGTAAACAGTGCAGCATCAGTCATGTTAAATTCGCCGACTCTCTCTCTCACATCTGCGTAGTCATCCTTGCCTTATAAGTAATCTTCATAAACTAGCCCACGTACGGTGCGCGATAGCCTTGAAAAGGCCGGGCAGTGCAGCACGCAGGCATGCAATGAGGAAAATAGACTGCTTGCTGAAAAACTACATGCTGAACGCTGTGAGTTTGCGTCTGGATGATGATACATGGGCCAGGCTTTTTAAACAATGTTGTTGGGCTATATTGCAGAGTTTGATGCAGCTTGGCTACTTTCATTAATCAAAAAGGCGCTCAGATTATTGCACAATGATAAGAAATAATATAGATCGAGCCACCAAACACATAAAAACAAAAGTAACAACTGTGGTTTTAAAATTGTAAGGAGTAGAAAGTACAGATATTTGTGTAAAAATGTAAGAAAAAAAAAGTTTAAAAAAAAGTAGTGGAGTAAAGTACTGATACCAGAAAAAATCTACCCTTTAGTATTTGTACTTTGTTACTTCCTATCTCTCATAAATATAATAATTCACTGCACTTCTCATGACTAG
Seq C2 exon
GTACAACGACTTGTTTGTGGAGAAAGACTGTCAAGGCGAAAGCTGTCATCAAACATACATGGAAGGTTGTTTCTGTCCCGATAACACGTATCTAGTTAGTTCAACGACAGATTACTGTACGGCTTACTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070331:ENSDART00000153708:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]