DreINT0014903 @ danRer10
Intron Retention
Gene
ENSDARG00000073761 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr5:3634906-3635376:-
Coord C1 exon
chr5:3635306-3635376
Coord A exon
chr5:3634977-3635305
Coord C2 exon
chr5:3634906-3634976
Length
329 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
AATGTGTATTATTTATACAGGAT
3' ss Score
6.87
Exon sequences
Seq C1 exon
GTCATCGCTCAGCTTGAAGCCTGTGGGATTGTGGAGACCATAAACATCAGTGCAGCGGGTTTTCCCATCAG
Seq A exon
GTAACACTGCAAACACGCATCTTTTACCATACAGTCTCTGTTTAATAATACACTGAATTTAATTGCCATTTTAATTCAAATTAGAGGTTTAGTGTAAAGACATGATTTGATATATTATACAGGACAGTTGAAGATTAAAATCATGCGTGTCAATTTTGTGTTTAACTATATTTAATTGATGCATATTAGCCAGAATTGCAGTTTCAAATATAGAGAATAAGACATCAATTGTTCCAGTCTAATAGCTCAAAGCAAAATTAGTTCATATTTTCTTCCTTAGCAGAGTTTTCTATTGAATTCACTCTTAATAATGTGTATTATTTATACAG
Seq C2 exon
GATCCCAAATGACAGCTTCTTCCAAAGATATGGGCTGATTGCAAACAACAGACTAGCAGCAAAGAAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073761:ENSDART00000111453:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(18.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(18.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]