RnoINT0096965 @ rn6
Intron Retention
Gene
ENSRNOG00000002852 | Myo19
Description
myosin XIX [Source:RGD Symbol;Acc:1559961]
Coordinates
chr10:72220420-72222744:+
Coord C1 exon
chr10:72220420-72220490
Coord A exon
chr10:72220491-72222640
Coord C2 exon
chr10:72222641-72222744
Length
2150 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
3' ss Seq
TTGCCTGCTTTGGCTTCTAGGGT
3' ss Score
9.08
Exon sequences
Seq C1 exon
GTCCTGAACCAGTTAGAGGCCTGTGGTCTTGTGGAGACCATCCACATCAGTGCTGCTGGCTTTCCCATCCG
Seq A exon
GTAAGTAAGCCACATTGCTGTAGGACCAAAGCCTGGTGGCACTCAGAACTTGGGACAGACTGGGAGGTGGGAATTAGGAGAATGGCAGGTGTGTGGATGGCAGGTGTGTGGATGGCAGGTGTGTGGATGGCAGGTGTTCGGATGGCAGGTGTGTGGCAGTCTACCTGGAAGGCAAGGGATAGCACCTGTACATTTACTCTGTCACTCTATAATCTCTGCCCTGGTAGGACTACACTCCCATGGAAACAAGAACATTAAGTATGAGCCAGACACGGTAGTGCACACCTATGATCTCAGCACTCCAAACGAGACAGGAAGATCAACATTAAGGCAAGCCTGGGCTATATAGCGAGTTTGAGGCCAGACTGAGATAGAGTGGGAGACCCTAGTGAATCACGTAAGAATGATTCAAAAATCAACAAAAGGGCTGGGTGGGTGCTAGAGAGATCGATGACTCTGAGGTTCAGAGTACAAACTACTCTTACAGAGGACCCAAGTTTGGTTCCCAGCATCCACACAGGGCAGATCACACTGCCTGAGAGTCCAGCTCCAACGACCCCTCGGGCTTCATGGGTGTCAGCACTTACAGGTACAGACCCACACCCACCCACCCACTCCACACAGATGTAATTAAGTAGAATATAAATACATCTTTTTTAAGGGTCTAGGGTTTGGCGCACTGGCTACTCTCCAGAAAGACTGGAGTTCAATTCCCAGCATGCACATAGCAGCTAACAGTCATCTATTAATTCCAGTTCCAGGGCATCGGAATCCTTCCTCTGGCCTCCACAGTCACCAGGCATGCACATGTTACACAGACATATACGCCGGCAAAACTCTCATATATATAATGTTTTTAATTTACAAAGCCAATTTTTTAAAGAATCAGTAAACAAATTTTAAAAGGGTCTGGGGAAATGGCTCATGGGTAAAGAGCTTGCTGGGACCGAAGTCTGGGTCTCCACGGTCCATGTTATTTAAGCTAGGTATGGCAATAAGCATTGTAGTCCCAGTTCTGGGAGATGGACACAGAATTTCATGGGTCTACTGGCCAGCCAGTGTAACCAACCAGTCAGTGAGCTGCAGGCTCAATAAGAAACTCTCTCTCAAAAAAATTGAGAGCTAGAGAGAAAGGCTTCCATTGTCAAATTAAAGCATTCACCTGTGCAGGCATGCACACACTTAACGCAGATAACACACCTACACACAAGTGTAAGTACAACTAGTGCTGAGAAACAGAATTTGTTGCTGGCATGCAGGGAGAATCCACGGGCTGGTTATCCGTGTAGGCCCAGAGAAAAGGAAAGGGCCCGCCAGGGAGACTTAGAACAGAGAAAAGCCATAGTGAGGTACCAGGGGACTGGGCCACCGAGAAGGAGCAGGATGTAAGCGAACAGGGGCCAGATGGAGCAGGCTCGAGACCCGTCACAGTTGCTCTGAGTGCACTGGAAGCTGCTGGTGTGAGAAGGGAGTGGCAGTATCTTGTATTCTCAGAGAATCCTTGTCTGCTCACTGGAGGGCGGGTGCAGGGTTAGGATAGACGGAAGTTGAGTGAGGAGGCTGTTGCTGATATCATGGAGCAGGATTAGCTGTGAAAACTGGGAGCAATGGGGCAAACTGAGATATAGTTGACAGTAAAGAGAACTGGACAGTTCTTCAGACTCGTGTGAGGCCTCAGCTTCCAGGCTGTAGAGAGAACTTGCTGTTTTCTGGGGCAGATGGTTGAATCAGGACAGTTTAGCAAAATGGGTTAGTCTTGGGGAGACCCGAGTTGGAGTGTTTCAAGAACCGTGCAGGCACATGTTGTCTGTCCTCAGTGCGTGTGAGCACCCCACTGCCACCAGGGACGCCTACCACACCACATGGAAGTCAGAGGACCACTTAGCAAGACCATTCCTCTTCCACCGGATGGGTCTCCAGGATGGAACTCAGGTTGTCAGGCTTGGCAACCGGCATTTTTATTTGTCTTGCCAGCCACAAACTCAATTTTACATGGTATCTGCAGGCTTCCCACTGAGTGACCCTGGGCATCTCTAGAACACACCCTCCTCCATTCATCCAGTGTGATCGTCAGGGCAGCACTGGCTTTGAGTTCCAGCTAGGGACCTGGCTGACAAAGTCATTCTCTTTTTGCCTGCTTTGGCTTCTAG
Seq C2 exon
GGTCTCTCACCAGAACTTCATGGAAAGATATAAATTGCTAACAAGACTCCGACCTCGTACATCCTCTGGCCTCAGGAGCCTGTGTCCTGCCAAAGGGTCCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002852:ENSRNOT00000003886:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.019
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.5=100)
A:
NA
C2:
PF0006316=Myosin_head=PD(4.0=72.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]