GgaINT1018740 @ galGal4
Intron Retention
Gene
ENSGALG00000012984 | MYO5B
Description
myosin VB [Source:HGNC Symbol;Acc:HGNC:7603]
Coordinates
chr28:1134094-1134371:-
Coord C1 exon
chr28:1134285-1134371
Coord A exon
chr28:1134206-1134284
Coord C2 exon
chr28:1134094-1134205
Length
79 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCCC
5' ss Score
5.77
3' ss Seq
CCCTCTATGTACCCCTGCAGGTG
3' ss Score
10.92
Exon sequences
Seq C1 exon
CTTTGACTCCAGGAGAGCAGTGGAGCAGCTGAGAGCTTGCGGAGTGCTGGAGACCATCCGGATCAGTGCTGCTGGTTACCCCTCCAG
Seq A exon
GTGCCCCCCCAGCTCCCCCAGCACCATGGGGGTCCCCCTGGCTGTGGCACCCTCTGATCCCCTCTATGTACCCCTGCAG
Seq C2 exon
GTGGACATACCAGGAGTTCTTTGAGAGGTACAGGGCCCTGCTGAGCAGGGAGGAGCTGGTGGGTGATGATGCAAAGCAGAGCTGCAGCCTTGCCTTGGAGAGACTGCTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012984:ENSGALT00000021187:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAGTGGAGCAGCTGAGAG
R:
CAGCAGTCTCTCCAAGGCAAG
Band lengths:
182-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]