BtaINT0098155 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006489 | MYO5A
Description
myosin VA (heavy chain 12, myoxin) [Source:HGNC Symbol;Acc:HGNC:7602]
Coordinates
chr10:58086442-58086725:+
Coord C1 exon
chr10:58086442-58086528
Coord A exon
chr10:58086529-58086616
Coord C2 exon
chr10:58086617-58086725
Length
88 bp
Sequences
Splice sites
5' ss Seq
TCGGTGGGC
5' ss Score
5.46
3' ss Seq
ACATGAGTCTCTTTTCATAGGTG
3' ss Score
7.31
Exon sequences
Seq C1 exon
GTTTGATGAGAAGAGGGCAGTGCAGCAGCTGAGAGCATGCGGTGTCCTGGAAACCATTCGGATCAGCGCAGCAGGTTTCCCCTCTCG
Seq A exon
GTGGGCCTGGCAGCTTTCAAATACAAGGGATCCTCATGGGGGAGGTTCCTGCTGCCTTAGATAAGCTGACATGAGTCTCTTTTCATAG
Seq C2 exon
GTGGACTTACCAAGAATTTTTCAGCCGCTATCGGGTCCTAATGAAGCAAAAAGATGTGCTAAGTGACAGAAAGCAAACATGCAAGAATGTTTTAGAGAAACTGATAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006489:ENSBTAT00000008516:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATGAGAAGAGGGCAGTGC
R:
GCATGTTTGCTTTCTGTCACT
Band lengths:
167-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development